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Genomics|Features|E.Coli

E. Coli

E. Coli: Public Health and Genomic Insights - April 24, 2015

CDC Info

• E.coli (Escherichia coli)

CDC information: E.coli (Escherichia coli) 
Although most strains of E. coli are harmless, others can make you sick. Some kinds of E. coli can cause diarrhea, while others cause urinary tract infections, respiratory illness and pneumonia, and other illnesses

Whole genome sequencing for national surveillance of shiga toxin producing Escherichia coli O157.
Dallman TJ et al. Clin. Infect. Dis. 2015 Apr 17.

The utility and public health implications of PCR and whole genome sequencing for the detection and investigation of an outbreak of shiga toxin-producing Escherichia coli serogroup O26:H11.
Dallman TJ et al. Epidemiol. Infect. 2014 Oct 15. 1-9

Insights from 20 years of bacterial genome sequencing.
Land M et al. Funct. Integr. Genomics 2015 Mar (2) 141-61

Comparative genomic analysis of a multiple antimicrobial resistant enterotoxigenic E. coli O157 lineage from Australian pigs.
Wyrsch E et al. BMC Genomics 2015 165

Analysis of whole genome sequencing for the Escherichia coli O157:H7 typing phages.
Cowley LA et al. BMC Genomics 2015 Apr 8. (1) 271

Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-serotypes of shiga toxin-producing Escherichia coli O104.
Yan X et al. BMC Microbiol. 2015 (1) 83

GeneSippr: A rapid whole-genome approach for the identification and characterization of foodborne pathogens such as priority shiga toxigenic Escherichia coli.
Lambert D et al. PLoS ONE 2015 (4) e0122928

Complete genome sequence of a carbapenem-resistant extraintestinal pathogenic Escherichia coli strain belonging to the sequence type 131 H30R subclade.
Johnson TJ et al. Genome Announc 2015 (2)

Genome sequences of two bovine mastitis-causing Escherichia coli strains.
Kempf F et al. Genome Announc 2015 (2)

Draft genome sequence of NDM-5-producing Escherichia coli sequence type 648 and genetic context of blaNDM-5 in Australia.
Wailan AM et al. Genome Announc 2015 (2)

Public health investigation of two outbreaks of Shiga toxin-producing Escherichia coli O157 associated with consumption of watercress.
Jenkins C et al. Appl. Environ. Microbiol. 2015 Apr 3.

Draft genome sequence of enterotoxigenic Escherichia coli strain E24377A, obtained from a tribal drinking water source in India.
Tamhankar AJ et al. Genome Announc 2015 (2)

Comparative genomic analysis of two novel sporadic shiga toxin-producing Escherichia coli O104:H4 strains isolated 2011 in Germany.
Tietze E et al. PLoS ONE 2015 (4) e0122074

Clinical epidemiology and molecular analysis of extended-spectrum ß-lactamase-producing Escherichia coli in Nepal: characteristics of sequence types ST131 and ST648.
Sherchan JB et al. Antimicrob. Agents Chemother. 2015 Mar 30.

Comparison of whole genome sequences from human and non-human Escherichia coli O26 strains.
Norman KN et al. Front Cell Infect Microbiol 2015 21

Complete genome sequences of Escherichia coli strains 1303 and ECC-1470 isolated from bovine mastitis.
Leimbach A et al. Genome Announc 2015 (2)

Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates.
Sabarly V et al. Environ. Microbiol. 2015 Mar 25.

Insight into shiga toxin genes encoded by Escherichia coli O157 from whole genome sequencing.
Ashton PM et al. PeerJ 2015 e739

Genomic analysis and clinical importance of Escherichia coli isolate from patients with sepsis.
Chakraborty A et al. Indian J Pathol Microbiol 2015 Jan-Mar (1) 22-6

EcoliNet: a database of cofunctional gene network for Escherichia coli.
Kim Hanhae et al. Database (Oxford) 2015