SALMONELLA AND GENOMICS ::Public Health Genomics Knowledge Base (v1.2)

Public Health Genomics Knowledge Base (v1.2)



August 25, 2016

SALMONELLA AND GENOMICS

Last Updated: Aug 25, 2016

• Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings.
  Feasey Nicholas A et al. Nature genetics 2016 Aug
• What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B.
  Connor Thomas R, Owen Sian V, Langridge Gemma, Connell Steve, Nair Satheesh, Reuter Sandra, Dallman Timothy J, Corander Jukka, Tabing Kristine C, Le Hello Simon, Fookes Maria, Doublet Benoît, Zhou Zhemin, Feltwell Theresa, Ellington Matthew J, Herrera Silvia, Gilmour Matthew, Cloeckaert Axel, Achtman Mark, Parkhill Julian, Wain John, De Pinna Elizabeth, Weill François-Xavier, Peters Tansy, Thomson Nick.mBio 2016 (4)
• Whole genome sequencing analysis of Salmonella Enteritidis isolated in Chile provides insights about possible transmission between gulls, poultry and humans.
  Toro Magaly, Retamal Patricio, Ayers Sherry, Barreto Marlen, Allard Marc, Brown Eric W, Gonzalez-Escalona Narjol.Applied and environmental microbiology 2016 Aug
• Comparison of whole genome sequencing typing results and epidemiological contact information from outbreaks of Salmonella Dublin in Swedish cattle herds.
  Ågren Estelle C C, Wahlström Helene, Vesterlund-Carlson Catrin, Lahti Elina, Melin Lennart, Söderlund Robert.Infection ecology & epidemiology 2016 31782
• The use of whole genome sequencing for detecting antimicrobial resistance in nontyphoidal Salmonella.
  McDermott Patrick F et al. Antimicrobial agents and chemotherapy 2016 Jul
• Utility of algorithms for the analysis of integrated Salmonella surveillance data.
  Vrbova L, Patrick D M, Stephen C, Robertson C, Koehoorn M, Parmley E J, DE With N I, Galanis E.Epidemiology and infection 2016 Jul (10) 2165-75
• Turtles as a Possible Reservoir of Nontyphoidal Salmonella in Shanghai, China.
  Zhang Jianmin et al. Foodborne pathogens and disease 2016 Jun
• Complete and Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Anatum Isolates from Human and Bovine Sources.
  Nguyen Scott V et al. Genome announcements 2016 4(3)
• Investigating Salmonella Eko from Various Sources in Nigeria by Whole Genome Sequencing to Identify the Source of Human Infections.
  Leekitcharoenphon Pimlapas, Raufu Ibrahim, Nielsen Mette T, Rosenqvist Lund Birthe S, Ameh James A, Ambali Abdul G, Sørensen Gitte, Le Hello Simon, Aarestrup Frank M, Hendriksen Rene S.PloS one 2016 (5) e0156212
• Whole Genome DNA Sequence Analysis of Salmonella subspecies enterica serotype Tennessee obtained from related peanut butter foodborne outbreaks.
  Wilson Mark R, Brown Eric, Keys Chris, Strain Errol, Luo Yan, Muruvanda Tim, Grim Christopher, Jean-Gilles Beaubrun Junia, Jarvis Karen, Ewing Laura, Gopinath Gopal, Hanes Darcy, Allard Marc W, Musser Steven.PloS one 0 (6) e0146929
• Phenotypic and genetic changes in the life cycle of small colony variants of Salmonella enterica serotype Typhimurium induced by streptomycin.
  Li Wanli, Li Yinghui, Wu Yarong, Cui Yujun, Liu Yao, Shi Xiaolu, Zhang Qian, Chen Qiongcheng, Sun Qun, Hu Qinghua.Annals of clinical microbiology and antimicrobials 2016 (1) 37
• Genomic and Phenotypic Analysis Reveal the Emergence of an Atypical Salmonella Senftenberg Variant in China.
  Abd El Ghany Moataz et al. Journal of clinical microbiology 2016 May
• IL-7 primes IL-17 in mucosal-associated invariant T (MAIT) cells, which contribute to the Th17-axis in ankylosing spondylitis.
  Gracey Eric, et al. Annals of the rheumatic diseases 2016 5
• Influenza Virus Affects Intestinal Microbiota and Secondary Salmonella Infection in the Gut through Type I Interferons.
  Deriu Elisa, Boxx Gayle M, He Xuesong, Pan Calvin, Benavidez Sammy David, Cen Lujia, Rozengurt Nora, Shi Wenyuan, Cheng Genhong.PLoS pathogens 2016 May (5) e1005572
• Detection of amino acid substitutions in the GyrA protein of fluoroquinolone-resistant typhoidal Salmonella isolates using high-resolution mass spectrometry.
  Hassing Robert-Jan, Goessens Wil H, Zeneyedpour Lona, Sultan Sadaf, van Kampen Jeroen J, Verbon Annelies, van Genderen Perry J, Hays John P, Luider Theo M, Dekker Lennard J.International journal of antimicrobial agents 2016 Mar

• CDC Information (3)
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Relevant Resources

• Cancer Genomics and Epidemiology Navigator (CGEN)
• Genetics and Genomics Competencies Center (G2C2)
• NIH Genetic Testing Registry
• NIH MedGen Database
• Online Mendelian Inheritance in Man (OMIM)
• PharmGKB