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From CDC-Authored Genomics Publication Database

This database contains CDC-authored publications in public health genomics including infectious diseases, newborn screening, reproductive health, genetic testing, cancer, chronic diseases, birth defects and developmental disabilities, environmental and occupational health as well as laboratory, bioinformatics and statistical methods.

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• Outbreak of Salmonella Chailey Infections Linked To Precut Coconut Pieces - United States and Canada, 2017.
  Luna Sarah et al. MMWR. Morbidity and mortality weekly report 2018 Oct (39) 1098-1100
• Protracted Outbreak of Salmonella Newport Infections Linked to Ground Beef: Possible Role of Dairy Cows - 21 States, 2016-2017.
  Marshall Katherine E Heiman et al. MMWR. Morbidity and mortality weekly report 2018 Apr (15) 443-446
• Preliminary Incidence and Trends of Infections with Pathogens Transmitted Commonly Through Food - Foodborne Diseases Active Surveillance Network, 10 U.S. Sites, 2006-2017.
  Marder Mph Ellyn P et al. MMWR. Morbidity and mortality weekly report 2018 Mar (11) 324-328
• Shiga Toxin-Producing E. coli Infections Associated with Flour.
  Crowe Samuel J et al. The New England journal of medicine 2017 Nov 377(21) 2036-2043
• Foodborne cryptosporidiosis.
  Ryan Una et al. International journal for parasitology 2017 Nov
• PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.
  Nadon Celine et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2017 Jun (23)
• Multistate Outbreak of Salmonella Anatum Infections Linked to Imported Hot Peppers - United States, May-July 2016.
  Hassan Rashida et al. MMWR. Morbidity and mortality weekly report 2017 Jun (25) 663-667
• Comparative Analysis of Extended Spectrum Beta- Lactamase CTX-M-65-Producing Salmonella Infantis Isolates from Humans, Food Animals, and Retail Chickens in the United States.
  Tate Heather et al. Antimicrobial agents and chemotherapy 2017 May
• Incidence and Trends of Infections with Pathogens Transmitted Commonly Through Food and the Effect of Increasing Use of Culture-Independent Diagnostic Tests on Surveillance - Foodborne Diseases Active Surveillance Network, 10 U.S. Sites, 2013-2016.
  Marder Ellyn P et al. MMWR. Morbidity and mortality weekly report 2017 Apr (15) 397-403
• Utility of Combining Whole Genome Sequencing with Traditional Investigational Methods To Solve Foodborne Outbreaks of Salmonella Infections Associated with Chicken: A New Tool for Tackling This Challenging Food Vehicle.
  Crowe Samuel J et al. Journal of food protection 2017 Mar 654-660
• Notes from the Field: Multistate Outbreak of Escherichia coli O157:H7 Infections Linked to Dough Mix - United States, 2016.
  Gieraltowski Laura et al. MMWR. Morbidity and mortality weekly report 2017 Jan (3) 88-89
• Outbreak of Salmonella Oslo Infections Linked to Persian Cucumbers - United States, 2016.
  Bottichio Lyndsay et al. MMWR. Morbidity and mortality weekly report 2016 Dec (5051) 1430-1433
• Characteristics of Clusters of Salmonella and Escherichia coli O157 Detected by Pulsed-Field Gel Electrophoresis that Predict Identification of Outbreaks.
  Jones Timothy F et al. Foodborne pathogens and disease 2016 Sep
• Notes from the Field: Outbreak of Listeriosis Associated with Consumption of Packaged Salad - United States and Canada, 2015-2016.
  Self Julie L et al. MMWR. Morbidity and mortality weekly report (33) 879-881
• Evaluation of library preparation methods for Illumina next generation sequencing of small amounts of DNA from foodborne parasites.
  Nascimento Fernanda S et al. Journal of microbiological methods 2016 Aug
• Use of Whole Genome Sequencing and Patient Interviews To Link a Case of Sporadic Listeriosis to Consumption of Prepackaged Lettuce.
  Jackson K A et al. Journal of food protection 2016 May (5) 806-9
• Turtles as a Possible Reservoir of Nontyphoidal Salmonella in Shanghai, China.
  Zhang Jianmin et al. Foodborne pathogens and disease 2016 Jun
• Infection with Pathogens Transmitted Commonly Through Food and the Effect of Increasing Use of Culture-Independent Diagnostic Tests on Surveillance--Foodborne Diseases Active Surveillance Network, 10 U.S. Sites, 2012-2015.
  Huang Jennifer Y et al. MMWR. Morbidity and mortality weekly report 2016 Apr (14) 368-71
• Possible Airborne Person-to-Person Transmission of Mycobacterium bovis - Nebraska 2014-2015.
  Buss Bryan F et al. MMWR. Morbidity and mortality weekly report 2016 (8) 197-201
• Whole Genome Sequencing Analysis Accurately Predicts Antimicrobial Resistance Phenotypes in Campylobacter.
  Zhao S et al. Applied and environmental microbiology 2015 Oct
• Molecular subtyping of Clostridium botulinum by pulsed-field gel electrophoresis.
  Lúquez Carolina et al. Methods Mol. Biol. 2015 1301103-13
• Pulsed-field gel electrophoresis for disease monitoring and control.
  Besser John et al. Methods Mol. Biol. 2015 13013-7
• Evaluating the occurrence of Escherichia albertii in chicken carcass rinses by PCR, Vitek analysis, and sequencing of the rpoB gene.
  Lindsey Rebecca L et al. Appl. Environ. Microbiol. 2015 Mar 81(5) 1727-34
• Suitability of the molecular subtyping methods intergenic spacer region, direct genome restriction analysis, and pulsed-field gel electrophoresis for clinical and environmental Vibrio parahaemolyticus isolates.
  Lüdeke Catharina H M et al. Foodborne pathogens and disease 2014 Jul (7) 520-8
• Atypical Listeria monocytogenes serotype 4b strains harboring a lineage II-specific gene cassette.
  Lee Sangmi et al. Appl. Environ. Microbiol. 2012 Feb 78(3) 660-7
• Multi-locus variable number tandem repeat analysis for investigation of the genetic association of Clostridium difficile isolates from food, food animals and humans.
  Marsh Jane W et al. Anaerobe 2011 Aug 17(4) 156-60
• Subtyping Salmonella enterica serovar enteritidis isolates from different sources by using sequence typing based on virulence genes and clustered regularly interspaced short palindromic repeats (CRISPRs).
  Liu Fenyun et al. Appl. Environ. Microbiol. 2011 Jul 77(13) 4520-6

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