Publication Date: Mar 19, 2020
Advanced Molecular Detection Clips Content
NEWS
- Modelers Struggle to Predict the Future of the COVID-19 Pandemic
Adam D. The Scientist, Mar 12, 2020. - Journals, Peer Reviewers Cope with Surge in COVID-19 Publications
Jarvis C. The Scientist, Mar 17, 2020. - To spur new AI tools to fight coronavirus, tech leaders launch open database of scientific articles
Robbins R. STAT, Mar 16, 2020. - Customs officers seized 6 bags full of fake coronavirus testing kits at LAX
Mark M. Business Insider, Mar 18, 2020. - National Labs Launch SARS-CoV-2 Testing, But Questions About Demand Complicate Planning
Bonislawski A. 360dx, Mar 11, 2020. - Responding to Coronavirus Test Shortage, FDA Lets NY State Health Department Authorize Assays
360dx, Mar 13, 2020. - 'It's Not the Exact Same Virus Everywhere in the World'
Laub G. MedPage Today, Mar 19, 2020. - Which Species Transmit COVID-19 to Humans? We're Still Not Sure.
Jarvis C. The Scientist, Mar 16, 2020. - Coronavirus vaccines: five key questions as trials begin
Callaway E. Nature, Mar 18, 2020. - Could Crispr Be Humanity's Next Virus Killer?
Levy S. Wired, Mar 18, 2020.
EVENTS / TRAINING / WEB RESOURCES
- COVID-19 (2019 Novel Coronavirus) Research Guide
(library resources and alerts) CDC, Mar 16, 2020. - Coronavirus Disease Portal on Genomics and Precision Health
CDC, Office of Genomics and Precision Public Health, Mar 19, 2020. - COVID-19 Open Research Dataset (CORD-19)
(database) Mar 16, 2020.
CONCEPTS / COMMENTS
- Identifying and Interrupting Superspreading Events--Implications for Control of Severe Acute Respiratory Syndrome Coronavirus 2
Frieden TR, Lee CT. Emerg Infect Dis, Mar 18, 2020. - Emergence of evidence during disease outbreaks: lessons learnt from the Zika virus outbreak
Counotte MJ, et al. medRxiv, Mar 18, 2020.
METHODS / TOOLS
- Ultraplexing: increasing the efficiency of long-read sequencing for hybrid assembly with k-mer-based multiplexing.
Dilthey Alexander T et al. Genome biology 2020 Mar (1) 68 - Reliability of stool microbiome methods for DNA yields and sequencing among infants and young children.
Antosca Katherine et al. MicrobiologyOpen 2020 Mar e1018
EVOLUTION / ECOLOGY / POPULATIONS
- Origin, genomic diversity and microevolution of the Clostridium difficile B1/NAP1/RT027/ST01 strain in Costa Rica, Chile, Honduras and Mexico.
Guerrero-Araya Enzo et al. Microbial genomics 2020 Mar - Evidence of the Recombinant Origin and Ongoing Mutations in Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)
Huang JM, et al. bioRxiv, Mar 19, 2020. - International expansion of a novel SARS-CoV-2 mutant
Wang M, et al. medRxiv, Mar 17, 2020. - The proximal origin of SARS-CoV-2
Andersen KG, et al. Nat Med, Mar 17, 2020. - Genomic variance of the 2019-nCoV coronavirus.
Ceraolo Carmine et al. Journal of medical virology 2020 05 (5) 522-528 - Transmission dynamics and evolutionary history of 2019-nCoV.
Li Xingguang et al. Journal of medical virology 2020 05 (5) 501-511 - The 2019-new coronavirus epidemic: Evidence for virus evolution.
Benvenuto Domenico et al. Journal of medical virology 2020 04 (4) 455-459 - Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan.
Chan Jasper Fuk-Woo et al. Emerging microbes & infections 2020 Dec (1) 221-236 - Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding.
Lu Roujian et al. Lancet (London, England) 2020 02 (10224) 565-574 - Return of the founder Chikungunya virus to its place of introduction into Brazil is revealed by genomic characterization of exanthematic disease cases.
Pereira Gusmão Maia Zuinara et al. Emerging microbes & infections 2020 Dec (1) 53-57 - Genetic evolution of influenza viruses among selected countries in Latin America, 2017-2018.
Leite Juliana Almeida et al. PloS one 2020 (3) e0227962 - Culicoides species composition and molecular identification of host blood meals at two zoos in the UK.
England Marion E et al. Parasites & vectors 2020 Mar (1) 139
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
- Emergence of Mobile Colistin Resistance ( mcr-8 ) in a Highly Successful Klebsiella pneumoniae Sequence Type 15 Clone from Clinical Infections in Bangladesh.
Farzana Refath et al. mSphere 2020 Mar (2) - Molecular Characteristics of Klebsiella pneumoniae Isolates From Outpatients in Sentinel Hospitals, Beijing, China, 2010-2019.
Lu Bing et al. Frontiers in cellular and infection microbiology 2020 85 - Origin, maintenance and spread of antibiotic resistance genes within plasmids and chromosomes of bloodstream isolates of Escherichia coli .
Goswami Cosmika et al. Microbial genomics 2020 Mar - Colistin-resistance gene mcr in clinical carbapenem-resistant Enterobacteriaceae strains in China, 2014-2019.
Huang Hong et al. Emerging microbes & infections 2020 Dec (1) 237-245 - Emergence of an NDM-5-Producing Escherichia coli Sequence Type 410 Clone in Infants in a Children's Hospital in China.
Li Jun et al. Infection and drug resistance 2020 703-710
DETECTION / DIAGNOSIS
- Era of molecular diagnosis for pathogen identification of unexplained pneumonia, lessons to be learned.
Ai Jing-Wen et al. Emerging microbes & infections 2020 Dec (1) 597-600 - FT-IR Spectroscopy is a New Option for Outbreak Investigation: A Retrospective Analysis of an ESBL-producing Klebsiella pneumoniae Outbreak in a Neonatal Intensive Care Unit.
Rakovitsky Nadya et al. Journal of clinical microbiology 2020 Mar - Measures for diagnosing and treating infections by a novel coronavirus responsible for a pneumonia outbreak originating in Wuhan, China.
Yu Fei et al. Microbes and infection 2020 03 (2) 74-79
- Molecular and Epidemiologic Analysis of Diarrheal Pathogens in Children With Acute Gastroenteritis in Bangladesh During 2014-2019.
Sharif Nadim et al. The Pediatric infectious disease journal 2020 Mar - Evaluation of real-time PCR targeting the lipL32 gene for diagnosis of Leptospira infection.
Podgoršek Daša et al. BMC microbiology 2020 Mar (1) 59 - Rapid establishment of laboratory diagnostics for the novel coronavirus SARS-CoV-2 in Bavaria, Germany, February 2020.
Konrad Regina et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2020 03 (9) - Diagnosis of Acute Respiratory Syndrome Coronavirus 2 Infection by Detection of Nucleocapsid Protein
Diao B, et al. medRxiv, Mar 13, 2020. - Discovery of Bat Coronaviruses through Surveillance and Probe Capture-Based Next-Generation Sequencing.
Li Bei et al. mSphere 2020 01 (1) - Virus Isolation from the First Patient with SARS-CoV-2 in Korea.
Park Wan Beom et al. Journal of Korean medical science 2020 Feb (7) e84 - Diagnosing congenital Cytomegalovirus infection: don't get rid of dried blood spots.
Pellegrinelli Laura et al. BMC infectious diseases 2020 Mar (1) 217 - A new multiplex RT-qPCR method for the simultaneous detection and discrimination of Zika and chikungunya viruses.
Broeders Sylvia et al. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2020 Mar 160-170 - Targeted deep amplicon sequencing of kelch 13 and cytochrome b in Plasmodium falciparum isolates from an endemic African country using the Malaria Resistance Surveillance (MaRS) protocol.
L'Episcopia Mariangela et al. Parasites & vectors 2020 Mar (1) 137
- A Trypanosoma cruzi Genome Tandem Repetitive Satellite DNA Sequence as a Molecular Marker for a LAMP Assay for Diagnosing Chagas' Disease.
Ordóñez Diego et al. Disease markers 2020 8074314
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
- Outbreak of gastroenteritis highlighting the diagnostic and epidemiological challenges of enteroinvasive Escherichia coli , County of Halland, Sweden, November 2017.
Lagerqvist Nina et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2020 Mar (9) - Whole-Genome Analysis of Salmonella enterica Serovar Enteritidis Isolates in Outbreak Linked to Online Food Delivery, Shenzhen, China, 2018.
Jiang Min et al. Emerging infectious diseases 2020 Apr (4) 789-792 - Early transmission patterns of coronavirus disease 2019 (COVID-19) in travellers from Wuhan to Thailand, January 2020.
Okada Pilailuk et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2020 02 (8) - The first two cases of 2019-nCoV in Italy: Where they come from?
Giovanetti Marta et al. Journal of medical virology 2020 05 (5) 518-521 - Potential of large "first generation" human-to-human transmission of 2019-nCoV.
Li Xingguang et al. Journal of medical virology 2020 04 (4) 448-454 - An emergent clade of SARS-CoV-2 linked to returned travellers from Iran
Eden JS, et al. bioRxiv, Mar 17, 2020. - Evolving epidemiology of poliovirus serotype 2 following withdrawal of the type 2 oral poliovirus vaccine
Macklin GR, et al. Science, Mar 19, 2020. - Investigation of Presumptive HIV Transmission Associated with Hospitalization Using Nucleotide Sequence Analysis - New York, 2017.
Anderson Bridget J et al. MMWR. Morbidity and mortality weekly report 2020 Mar (10) 260-264 - Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17
Kamau E, et al. medRxiv, Mar 12, 2020. - Outbreak of Dirkmeia churashimaensis Fungemia in a Neonatal Intensive Care Unit, India.
Chowdhary Anuradha et al. Emerging infectious diseases 2020 Apr (4) 764-768
ANTIMICROBIALS / VACCINES / INTERVENTIONS
- Development of CRISPR as a prophylactic strategy to combat novel coronavirus and influenza
Abbott TR, et al. bioRxiv, Mar 14, 2020. - UV Disinfection of Human Norovirus: Evaluating Infectivity Using a Genome-Wide PCR-Based Approach.
Rockey Nicole et al. Environmental science & technology 2020 03 (5) 2851-2858 - The Case for Exploiting Cross-Species Epitopes in Malaria Vaccine Design.
Mitran Catherine J et al. Frontiers in immunology 2020 335
HOST-MICROBE INTERACTIONS
- Epigenetics of Sepsis.
Binnie Alexandra et al. Critical care medicine 2020 Feb - Whole-exome sequencing for the identification of rare variants in primary immunodeficiency genes in children with sepsis - a prospective population-based cohort study.
Borghesi Alessandro et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Mar - Relationship between the ABO Blood Group and the COVID-19 Susceptibility
Zhao J, et al. medRxiv, Mar 16, 2020. - Cell-free virus-host chimera DNA from Hepatitis B virus integration sites as a circulating biomarker of hepatocellular cancer.
Li Chiao-Ling et al. Hepatology (Baltimore, Md.) 2020 Mar - Advances in Understanding Human Genetic Variations That Influence Innate Immunity to Fungi.
Merkhofer Richard M et al. Frontiers in cellular and infection microbiology 2020 69 - Investigating the Gut Microbiota Composition of Individuals with Attention-Deficit/Hyperactivity Disorder and Association with Symptoms.
Szopinska-Tokov Joanna et al. Microorganisms 2020 Mar (3) - Antibiotic treatments during infancy, changes in nasal microbiota, and asthma development: Population-based cohort study.
Toivonen Laura et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Mar - Long-term dietary intervention reveals resilience of the gut microbiota despite changes in diet and weight.
Fragiadakis Gabriela K et al. The American journal of clinical nutrition 2020 Mar
Note:
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Public Health Genomics to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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