Advanced Molecular Detection Clips Database|AMD Clips|PHGKB
Publication Date: Jan 11, 2018
About Advanced Molecular Detection Clips
Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. Special emphasis is given to the use of next-generation genetic sequencing in infectious disease public health surveillance, investigation, and development of new diagnostics and interventions. The collection is not comprehensive but aims to capture highlights, while surveying a wide range of topics. CDC-authored articles are flagged. Items marked I&E address aspects of implementation or evaluation in clinical or public health practice.
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Advanced Molecular Detection Clips Content
NEWS
- Silicon gains ground in quantum-computing race
Castelvecchi D. Nature, Jan 10, 2018.
- Harvard-Led Team Develops Handheld Device for DNA, RNA Amplification, Detection
Gilmore J. 360dx, Jan 10, 2018.
- Mysterious explosion of a deadly plague may come down to a sugar in ice cream
Mole B. ArsTechnica, Jan 10, 2018.
- What the hell is going on? Polio cases are vanishing in Pakistan, yet the virus won't go away
Roberts L. Science, Jan 11, 2018.
- Scientists Continue to Use Outdated Methods
Offord C. The Scientist, Jan 9, 2018.
- Scientists race to find genetic clues as malaria decimates rare Hawaiian honeycreepers
Donahue MZ. Smithsonian Insider, Jan 9, 2018.
METHODS / TOOLS
- A Primer on Microbial Bioinformatics for non-bioinformaticians.
Carriço J A et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2018 Jan
- Evidence-based design and evaluation of a whole genome sequencing clinical report for the reference microbiology laboratory
Crisan A, et al. PeerJ, Jan 10, 2018.
- Real-time search of all bacterial and viral genomic data
Bradley P, et al. bioRxiv, Dec 15, 2018.
- NanoAmpli-Seq: A workflow for amplicon sequencing from mixed microbial communities on the nanopore sequencing platform
Calus ST, et al. bioRxiv, Jan 7, 2018.
- MentaLiST - A fast MLST caller for large MLST schemes.
Feijao Pedro et al. Microbial genomics 2018 Jan
- TreeTime: Maximum-likelihood phylodynamic analysis
Segulenko P, et al. Virus Evol, Jan 1, 2018.
- TOGGLe, a flexible framework for easily building complex workflows and performing robust large-scale NGS analyses
Tranchant-Dubreuil C, et al. bioRxiv, Jan 10, 2018.
- QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Skums Pavel et al. Bioinformatics (Oxford, England) 2018 Jan (1) 163-170
- Long read sequencing reveals poxvirus evolution through rapid homogenization of gene arrays
Sasani TA, et al. bioRxiv, Jan 9, 2018.
- Modeling the genetic relatedness of Plasmodium falciparum parasites following meiotic recombination and cotransmission.
Wong Wesley et al. PLoS computational biology 2018 Jan (1) e1005923
EVOLUTION / ECOLOGY / POPULATIONS
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
ANTIMICROBIALS / VACCINES / INTERVENTIONS
HOST-MICROBE INTERACTIONS
Note: indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Public Health Genomics to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
Advanced Molecular Detection Clips Database|AMD Clips|PHGKB
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