Metagenomics [NEW TOPIC PAGE]

PubMed Clinical Queries



From PubMed Clinical Queries

PubMed Clinical Queries is an utility offered by PubMed to search scientific literature in specific clinical research areas

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• Search PubMed Clinical Queries for "Metagenomics" 

Results: 5 of 441

• Probiotic supplementation restores normal microbiota composition and function in antibiotic-treated and in caesarean-born infants.
  Korpela K, Salonen A, Vepsäläinen O, Suomalainen M, Kolmeder C, Varjosalo M, Miettinen S, Kukkonen K, Savilahti E, Kuitunen M, et al.Microbiome. 2018 Oct 16; 6(1):182. Epub 2018 Oct 16.
• MetaSMC: A Coalescent-based Shotgun Sequence Simulator for Evolving Microbial Populations.
  Liao KH, Hon WK, Tang CY, Hsieh WP.Bioinformatics. 2018 Oct 13; . Epub 2018 Oct 13.
• Sparse Treatment-Effect Model for Taxon Identification with High-Dimensional Metagenomic Data.
  Liu Z, Lin S.Methods Mol Biol. 2018; 1849:309-318.
• Machine Learning for detection of viral sequences in human metagenomic datasets.
  Bzhalava Z, Tampuu A, Bała P, Vicente R, Dillner J.BMC Bioinformatics. 2018 Sep 24; 19(1):336. Epub 2018 Sep 24.
• Infant Colic Represents Gut Inflammation and Dysbiosis.
  Rhoads JM, Collins J, Fatheree NY, Hashmi SS, Taylor CM, Luo M, Hoang TK, Gleason WA, Van Arsdall MR, Navarro F, et al.J Pediatr. 2018 Aug 31; . Epub 2018 Aug 31.

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This column displays citations filtered to a specific clinical study category and scope. These search filters were developed by Haynes RB et al. See more filter information.

Systematic Reviews

Results: 5 of 68

• eDNA as a tool for identifying freshwater species in sustainable forestry: A critical review and potential future applications.
  Coble AA, Flinders CA, Homyack JA, Penaluna BE, Cronn RC, Weitemier K.Sci Total Environ. 2019 Feb 1; 649:1157-1170. Epub 2018 Aug 28.
• 'How to do it' - a molecular investigation of a hospital outbreak.
  Nutman A, Marchaim D.Clin Microbiol Infect. 2018 Oct 1; . Epub 2018 Oct 1.
• A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota.
  Cornejo-Granados F, Gallardo-Becerra L, Leonardo-Reza M, Ochoa-Romo JP, Ochoa-Leyva A.PeerJ. 2018; 6:e5382. Epub 2018 Aug 10.
• The Gut Microbiome Profile in Obesity: A Systematic Review.
  Castaner O, Goday A, Park YM, Lee SH, Magkos F, Shiow STE, Schröder H.Int J Endocrinol. 2018; 2018:4095789. Epub 2018 Mar 22.
• Identification of tick-borne pathogen diversity by metagenomic analysis in Haemaphysalis longicornis from Xinyang, China.
  Zhuang L, Du J, Cui XM, Li H, Tang F, Zhang PH, Hu JG, Tong YG, Feng ZC, Liu W.Infect Dis Poverty. 2018 May 7; 7(1):45. Epub 2018 May 7.

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This column displays citations for systematic reviews, meta-analyses, reviews of clinical trials, evidence-based medicine, consensus development conferences, and guidelines. See filter information or additional related sources.

Medical Genetics

Topic:AllDiagnosisDifferential DiagnosisClinical DescriptionManagementGenetic CounselingMolecular GeneticsGenetic Testing

Results: 5 of 4821

• Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes.
  Alneberg J, Karlsson CMG, Divne AM, Bergin C, Homa F, Lindh MV, Hugerth LW, Ettema TJG, Bertilsson S, Andersson AF, et al.Microbiome. 2018 Sep 28; 6(1):173. Epub 2018 Sep 28.
• Quito's virome: Metagenomic analysis of viral diversity in urban streams of Ecuador's capital city.
  Guerrero-Latorre L, Romero B, Bonifaz E, Timoneda N, Rusiñol M, Girones R, Rios-Touma B.Sci Total Environ. 2018 Dec 15; 645:1334-1343. Epub 2018 Jul 23.
• Macroecology to Unite All Life, Large and Small.
  Shade A, Dunn RR, Blowes SA, Keil P, Bohannan BJM, Herrmann M, Küsel K, Lennon JT, Sanders NJ, Storch D, et al.Trends Ecol Evol. 2018 Oct; 33(10):731-744. Epub 2018 Sep 9.
• Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin.
  Hooper R, Brealey JC, van der Valk T, Alberdi A, Durban JW, Fearnbach H, Robertson KM, Baird RW, Hanson MB, Wade P, et al.Mol Ecol. 2018 Sep 6; . Epub 2018 Sep 6.
• Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
  Rotimi AM, Pierneef R, Reva ON.BMC Bioinformatics. 2018 Aug 30; 19(1):309. Epub 2018 Aug 30.

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This column displays citations pertaining to topics in medical genetics. See more filter information.