Advanced Molecular Detection Clips Database|AMD Clips|PHGKB
Publication Date: Aug 2, 2018
About Advanced Molecular Detection Clips
Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. Special emphasis is given to the use of next-generation genetic sequencing in infectious disease public health surveillance, investigation, and development of new diagnostics and interventions. The collection is not comprehensive but aims to capture highlights, while surveying a wide range of topics. CDC-authored articles are flagged. Items marked I&E address aspects of implementation or evaluation in clinical or public health practice.
View Data Selection Criteria
Advanced Molecular Detection Clips Content
EVENTS / TRAINING / WEB RESOURCES
METHODS / TOOLS
- Nanopore-based DNA sequencing in clinical microbiology: preliminary assessment of basic requirements
Harstad H, et al. bioRxiv, Aug 1, 2018.
- NanoPack: visualizing and processing long-read sequencing data.
De Coster Wouter et al. Bioinformatics (Oxford, England) 2018 Aug (15) 2666-2669
- Resolving the complex Bordetella pertussis genome using barcoded nanopore sequencing
Ring N, et al. bioRxiv, Jul 31, 2018.
- MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies.
Robertson James et al. Microbial genomics 2018 Jul
- Geographically-stratified HIV-1 group M pol subtype and circulating recombinant form sequences.
Rhee Soo-Yon et al. Scientific data 2018 Jul 180148
- Selection analyses of paired HIV-1 gag and gp41 sequences obtained before and after antiretroviral therapy.
Tzou Philip L et al. Scientific data 2018 Jul 180147
- Detecting within-host interactions using genotype combination prevalence data
Alizon S, et al. bioRxiv, Jul 30, 2018.
- Characterizing Microbiome Dynamics - Flow Cytometry Based Workflows from Pure Cultures to Natural Communities.
Lambrecht Johannes et al. Journal of visualized experiments : JoVE 2018 07 (137)
- Recognizing the reagent microbiome.
de Goffau Marcus C et al. Nature microbiology 2018 Aug (8) 851-853
- Digital open science-Teaching digital tools for reproducible and transparent research.
Toelch Ulf et al. PLoS biology 2018 Jul (7) e2006022
EVOLUTION / ECOLOGY / POPULATIONS
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
ANTIMICROBIALS / VACCINES / INTERVENTIONS
HOST-MICROBE INTERACTIONS
Note:
indicates that at least one CDC-affiliated author;
indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Public Health Genomics to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
Advanced Molecular Detection Clips Database|AMD Clips|PHGKB
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