Public Health Genomics Knowledge Base (v1.2)
August 11-18, 2016
ACTUALIZACIÓN MÉDICO-CONTINUADA EN GENÓMICA Y SU IMPACTO EN LA SALUD PÚBLICA || TRATADO CONTINUO DE ENFERMEDADES USUALMENTE "COMUNICABLES" - Public Health Genomics Knowledge Base (v1.2) | 14 de AGOSTO de 2016
ACTUALIZACIÓN QUE COMPRENDE desde el 11 de AGOSTO al 18 de AGOSTO de 2016
About Advanced Molecular Detection Clips
Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. Special emphasis is given to the use of next-generation genetic sequencing in infectious disease public health surveillance, investigation, and development of new diagnostics and interventions. The collection is not comprehensive but aims to capture highlights, while surveying a wide range of topics. CDC-authored articles are flagged. Items marked I&E address aspects of implementation or evaluation in clinical or public health practice.
Advanced Molecular Detection Clips Content
NEWS
- US approves GMO mosquito test, but no release imminent
Kay J. Washington Post, Aug 5, 2016.
- Three vaccines prevent Zika infection in monkeys; vaccine trial in humans gets underway
Kaplan K. Los Angeles Times, Aug 4, 2016.
- Unpacking the innards of Theranoss new Zika-detection box
Buhr S. Tech Crunch, Aug 5, 2016.
- INFECTIOUS DISEASE. Zika vaccine has a good shot.
Cohen Jon et al. Science (New York, N.Y.) 2016 Aug (6299) 529-30
- BC researchers collaborate with Oxford University and Public Health England to make TB genomic data quick and easy to read for clinicians
(news release) Genome British Columbia, Aug 9, 2016.
- Diagnostics at Home: Mately Uses Blood Spots to Track STDs
McCann R. Diagnostics World, Aug 4, 2016.
- HHS, international partners launch antibiotic research accelerator
Healio, Jul 31, 2016.
- Beyond CRISPR: A guide to the many other ways to edit a genome
Ledford H. Nature, Aug 8, 2016.
- Garvan Team Uses Synthetic DNA to Create Spike-In Method for NGS Assay Validation
Heger M. GenomeWeb, Aug 8, 2016.
- Not your momma's microbe lab: a new genetic engineering machine takes microbial design to the masses
Gilman C. philly.com, Aug 9, 2016.
- MIT researchers are sending robots into sewers to help predict disease outbreaks
Nguyen C. Business Insider, Aug 4, 2016.
EVENTS / TRAINING / WEB RESOURCES
EVOLUTION / ECOLOGY / POPULATIONS
- Evolution and Diversity of Listeria monocytogenes from Clinical and Food Samples in Shanghai, China.
Zhang Jianmin et al. Frontiers in microbiology 2016 1138
- Taxonomic reassessment of the genus Elizabethkingia using whole genome sequencing: Elizabethkingia endophytica Kämpfer et al. 2015 is a later subjective synonym of Elizabethkingia anophelis Kämpfer et al. 2011.
Doijad Swapnil et al. International journal of systematic and evolutionary microbiology 2016 Aug
- Epidemiological Investigation of Legionella pneumophila serogroups 2-14 Isolates from Water Samples by Amplified Fragment Length Polymorphism and Sequence-Based Typing and Detection of Virulence Traits.
Katsiaflaka Anna et al. Applied and environmental microbiology 2016 Aug
- Population structure of invasive Streptococcus pneumoniae isolates among Alaskan children in the conjugate vaccine era, 2001 to 2013.
Miernyk Karen M et al. Diagnostic microbiology and infectious disease 2016 Jul
- Recombination-driven genome evolution and stability of bacterial species
Dixit PD, et al. bioRxiv, Aug 4, 2016.
- Identification of source and sink populations for the emergence and global spread of the East-Asia clone of community-associated MRSA.
Ward Melissa J et al. Genome biology 2016 (1) 160
- Short term evolution of Shiga toxin producing Escherichia coli O157:H7 between two food-borne outbreaks
Cowley LA, et al. Microb Genom, Aug 9, 2016.
- Massive dispersal of Coxiella burnetii among cattle across the United States
Olivas S, et al. Microb Genom, Aug 1, 2016.
- Whole genome sequencing reveals mycobacterial microevolution among concurrent isolates from sputum and blood in HIV infected TB patients.
Ssengooba Willy et al. BMC infectious diseases 2016 371
- Different Variants in Reverse Transcriptase Domain Determined by Ultra-deep Sequencing in Treatment-naïve and Treated Indonesian Patients Infected with Hepatitis B Virus.
Wasityastuti Widya et al. The Kobe journal of medical sciences 2016 (1) E1-8
- Complete Genome Sequence of Zika Virus Isolated in Mexico, 2016.
Díaz-Quiñonez José Alberto et al. Genome announcements 2016 (4)
- Diversity and Tropism of HIV-1 Rebound Virus Populations in Plasma Level After Treatment Discontinuation.
Bednar Maria M et al. The Journal of infectious diseases 2016 Aug (3) 403-7
- Genotypes of rubella virus and the epidemiology of rubella infections in the Democratic Republic of the Congo, 2004-2013.
Pukuta Elizabeth et al. Journal of medical virology 2016 Oct (10) 1677-84
- Molecular evolution and the global reemergence of enterovirus D68 by genome-wide analysis.
Gong Yu-Nong et al. Medicine 2016 Aug (31) e4416
- MLST and Whole-Genome-Based Population Analysis of Cryptococcus gattii VGIII Links Clinical, Veterinary and Environmental Strains, and Reveals Divergent Serotype Specific Sub-populations and Distant Ancestors.
Firacative Carolina et al. PLoS neglected tropical diseases 2016 Aug (8) e0004861
- Onchocerciasis transmission in Ghana: the human blood index of sibling species of the Simulium damnosum complex.
Lamberton Poppy H L et al. Parasites & vectors 2016 (1) 432
- Animal genomics in natural reservoirs of infectious diseases.
Cowled C et al. Revue scientifique et technique (International Office of Epizootics) 2016 Apr (1) 159-74
- Extensive genetic diversity among populations of the malaria mosquito Anopheles moucheti revealed by population genomics
Fouet C, et al. bioRxiv, Aug 6, 2016.
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
ANTIMICROBIALS / VACCINES / INTERVENTIONS
HOST-MICROBE INTERACTIONS
Note: indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Public Health Genomics to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
Public Health Genomics Knowledge Base (v1.2)
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