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From CDC-Authored Genomics Publication Database

This database contains CDC-authored publications in public health genomics including infectious diseases, newborn screening, reproductive health, genetic testing, cancer, chronic diseases, birth defects and developmental disabilities, environmental and occupational health as well as laboratory, bioinformatics and statistical methods.

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• Automated quality control for a molecular surveillance system.
  Sims Seth et al. BMC bioinformatics 2018 Oct (Suppl 11) 358
• Reassessment of High Prevalence Human Adenovirus Detections Among Residents of Two Refugee Centers in Kenya Under Surveillance for Acute Respiratory Infections.
  Wu Xinwei et al. Journal of medical virology 2018 Sep
• Towards national systems for continuous surveillance of antimicrobial resistance: Lessons from tuberculosis.
  Suthar Amitabh B et al. PLoS medicine 2018 Sep (9) e1002658
• Performance of Surveillance Case Definitions in Detecting Respiratory Syncytial Virus Infection Among Young Children Hospitalized With Severe Respiratory Illness-South Africa, 2009-2014.
  Rha Brian et al. Journal of the Pediatric Infectious Diseases Society 2018 Jun
• Avian influenza surveillance in domestic waterfowl and environment of live bird markets in Bangladesh, 2007-2012.
  Khan Salah Uddin et al. Scientific reports 2018 Jun (1) 9396
• Point-Counterpoint: Active Surveillance for Carriers of Toxigenic Clostridium difficile Should Be Performed To Guide Prevention Efforts.
  McDonald L Clifford et al. Journal of clinical microbiology 2018 Aug (8)
• Malaria Surveillance - United States, 2015.
  Mace Kimberly E et al. Morbidity and mortality weekly report. Surveillance summaries (Washington, D.C. : 2002) 2018 05 (7) 1-28
• Mapping of the US Domestic Influenza Virologic Surveillance Landscape.
  Jester Barbara et al. Emerging infectious diseases 2018 Jul (7)
• Notes from the Field: Surveillance for Candida auris - Colombia, September 2016-May 2017.
  Escandón Patricia et al. MMWR. Morbidity and mortality weekly report 2018 Apr (15) 459-460
• Surveillance to Track Progress Toward Polio Eradication - Worldwide, 2016-2017.
  Gardner Tracie J et al. MMWR. Morbidity and mortality weekly report 2018 Apr 67(14) 418-423
• Field investigation with real-time virus genetic characterisation support of a cluster of Ebola virus disease cases in Dubréka, Guinea, April to June 2015.
  Pini Alessandro et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2018 Mar 23(12)
• Preliminary Incidence and Trends of Infections with Pathogens Transmitted Commonly Through Food - Foodborne Diseases Active Surveillance Network, 10 U.S. Sites, 2006-2017.
  Marder Mph Ellyn P et al. MMWR. Morbidity and mortality weekly report 2018 Mar (11) 324-328
• Statistical adjustment of culture-independent diagnostic tests for trend analysis in the Foodborne Diseases Active Surveillance Network (FoodNet), USA.
  Gu Weidong et al. International journal of epidemiology 2018 Mar
• Cross-Sectional HIV Incidence Surveillance: A Benchmarking of Approaches for Estimating the 'Mean Duration of Recent Infection'.
  Kassanjee Reshma et al. Statistical communications in infectious diseases 2017 Mar (1)
• Antimicrobial resistance in leprosy: results of the first prospective open survey conducted by a WHO surveillance network for the period 2009-2015.
  Cambau Emmanuelle et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2018 Feb
• A next-generation sequencing and bioinformatics protocol for Malaria drug Resistance marker Surveillance (MaRS).
  Talundzic Eldin et al. Antimicrobial agents and chemotherapy 2018 Feb
• Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance.
  Timme Ruth E et al. PeerJ 2017 e3893
• Surveillance for and Discovery of Borrelia Species in US Patients Suspected of Tickborne Illness.
  Kingry Luke C et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Jun (12) 1864-1871
• GHOST: global hepatitis outbreak and surveillance technology.
  Longmire Atkinson G et al. BMC genomics 2017 Dec (Suppl 10) 916
• Multiplex RT-PCR for Simultaneous Surveillance of Influenza A and B Viruses.
  Zhou Bin et al. Journal of clinical microbiology 2017 Oct
• Molecular Surveillance for Bartonella, Borrelia, and Rickettsia Species in Ticks from Desert Bighorn Sheep (Ovis canadensis) and Mule Deer (Odocoileus hemionus) in Southern California.
  Billeter Sarah A et al. Journal of wildlife diseases 2017 Oct
• National Antimicrobial Resistance Monitoring System: Two Decades of Advancing Public Health Through Integrated Surveillance of Antimicrobial Resistance.
  Karp Beth E et al. Foodborne pathogens and disease 2017 Aug
• The role of supplementary environmental surveillance to complement acute flaccid paralysis surveillance for wild poliovirus in Pakistan - 2011-2013.
  Cowger Tori L et al. PloS one 2017 (7) e0180608
• PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.
  Nadon Celine et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2017 Jun (23)
• Surveillance for sulfadoxine-pyrimethamine resistant malaria parasites in the Lake and Southern Zones, Tanzania, using pooling and next-generation sequencing.
  Ngondi Jeremiah M et al. Malaria journal 2017 Jun (1) 236
• Malaria Surveillance - United States, 2014.
  Mace Kimberly E et al. Morbidity and mortality weekly report. Surveillance summaries (Washington, D.C. : 2002) 2017 05 (12) 1-24
• Transmission fitness of drug-resistant HIV revealed in a surveillance system transmission network.
  Wertheim Joel O et al. Virus evolution 2017 Jan (1) vex008
• Incidence and Trends of Infections with Pathogens Transmitted Commonly Through Food and the Effect of Increasing Use of Culture-Independent Diagnostic Tests on Surveillance - Foodborne Diseases Active Surveillance Network, 10 U.S. Sites, 2013-2016.
  Marder Ellyn P et al. MMWR. Morbidity and mortality weekly report 2017 Apr (15) 397-403
• Surveillance Systems to Track Progress Toward Polio Eradication - Worldwide, 2015-2016.
  Maes Edmond F et al. MMWR. Morbidity and mortality weekly report 2017 Apr (13) 359-365
• Evaluation of Automated Molecular Testing Rollout for Tuberculosis Diagnosis Using Routinely Collected Surveillance Data - Uganda, 2012-2015.
  Scott Colleen et al. MMWR. Morbidity and mortality weekly report 2017 Mar (12) 339-342
• Near Real-Time Surveillance of U.S. Norovirus Outbreaks by the Norovirus Sentinel Testing and Tracking Network - United States, August 2009-July 2015.
  Shah Minesh P et al. MMWR. Morbidity and mortality weekly report 2017 Feb (7) 185-189
• Surveillance of HIV-1 pol transmitted drug resistance in acutely and recently infected antiretroviral drug-naïve persons in rural western Kenya.
  Onywera Harris et al. PloS one 2017 (2) e0171124
• Detection of neonatal unit clusters of Candida parapsilosis fungaemia by microsatellite genotyping: Results from laboratory-based sentinel surveillance, South Africa, 2009-2010.
  Magobo Rindidzani E et al. Mycoses 2017 Jan
• Lymphatic Filariasis Elimination in American Samoa: Evaluation of Molecular Xenomonitoring as a Surveillance Tool in the Endgame.
  Lau Colleen L et al. PLoS neglected tropical diseases 2016 Nov (11) e0005108
• Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes.
  Moura Alexandra et al. Nature microbiology 2016 Oct 16185
• Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa.
  et al. PLoS neglected tropical diseases 2016 Sep 10(9) e0004781
• Emergence of epidemic Neisseria meningitidis serogroup C in Niger, 2015: an analysis of national surveillance data.
  Sidikou Fati et al. The Lancet. Infectious diseases 2016 Aug
• Sentinel Surveillance for Influenza among Severe Acute Respiratory Infection and Acute Febrile Illness Inpatients at Three Hospitals in Ghana.
  Jones Alexander H et al. Influenza and other respiratory viruses 2016 May
• Infection with Pathogens Transmitted Commonly Through Food and the Effect of Increasing Use of Culture-Independent Diagnostic Tests on Surveillance--Foodborne Diseases Active Surveillance Network, 10 U.S. Sites, 2012-2015.
  Huang Jennifer Y et al. MMWR. Morbidity and mortality weekly report 2016 Apr (14) 368-71
• Surveillance Systems to Track Progress Toward Polio Eradication - Worldwide, 2014-2015.
  Snider Cynthia J et al. MMWR. Morbidity and mortality weekly report 2016 (13) 346-51
• An Economic Evaluation of PulseNet: A Network for Foodborne Disease Surveillance.
  Scharff Robert L et al. American journal of preventive medicine 2016 Feb
• Surveillance for Severe Acute Respiratory Infections (SARI) in Southern Arizona, 2010-2014.
  Wansaula Zimy et al. Influenza and other respiratory viruses 2015 Nov
• Outcomes of in vitro fertilization with preimplantation genetic diagnosis: an analysis of the Unites States Assisted Reproductive Technology Surveillance Data, 2011-2012.
  Chang Jeani et al. Fertility and sterility 2015 Nov
• Assessing the impact of pneumococcal conjugate vaccines on invasive pneumococcal disease using polymerase chain reaction-based surveillance: an experience from South Africa.
  Tempia Stefano et al. BMC infectious diseases 2015 15(1) 450
• Development of a TaqMan Array Card for Acute Febrile Illness Outbreak Investigation and Surveillance of Emerging Pathogens including Ebola Virus.
  Liu Jie et al. Journal of clinical microbiology 2015 Oct
• A Field-Validated Approach Using Surveillance and Genotyping Data to Estimate Tuberculosis Attributable to Recent Transmission in the United States.
  France Anne Marie et al. American journal of epidemiology 2015 Nov (9) 799-807
• In vitro and molecular surveillance for antimalarial drug resistance in Plasmodium falciparum parasites in western Kenya reveals sustained artemisinin sensitivity and increased chloroquine sensitivity.
  Lucchi Naomi W et al. Antimicrob. Agents Chemother. 2015 Sep 21.
• Population-Based Surveillance of Neisseria meningitidis Antimicrobial Resistance in the United States.
  Harcourt Brian H et al. Open Forum Infect Dis 2015 Sep 2(3) ofv117
• Using Molecular HIV Surveillance Data to Understand Transmission Between Subpopulations in the United States.
  Oster Alexandra M et al. Journal of acquired immune deficiency syndromes (1999) 2015 Dec 70(4) 444-51
• Effect of Culture-Independent Diagnostic Tests on Future Emerging Infections Program Surveillance.
  Langley Gayle et al. Emerging infectious diseases 2015 Sep (9) 1582-8
• Rotavirus Group A Genotypes Detected Through Diarrheal Disease Surveillance in Haiti, 2012.
  Esona Mathew D et al. Am. J. Trop. Med. Hyg. 2015 Jul 8. 93(1) 54-6
• Molecular genotyping and quantitation assay for rotavirus surveillance.
  Liu Jie et al. Journal of virological methods 2015 Mar 157-63
• Use of highly pathogenic avian influenza A(H5N1) gain-of-function studies for molecular-based surveillance and pandemic preparedness.
  Davis C Todd et al. MBio 2014 5(6)
• Molecular mechanisms of fluconazole resistance in Candida parapsilosis isolates from a U.S. surveillance system.
  Grossman Nina T et al. Antimicrob. Agents Chemother. 2015 Feb 59(2) 1030-7
• Environmental surveillance for toxigenic Vibrio cholerae in surface waters of Haiti.
  Kahler Amy M et al. Am. J. Trop. Med. Hyg. 2015 Jan 92(1) 118-25
• Switch from oral to inactivated poliovirus vaccine in Yogyakarta Province, Indonesia: summary of coverage, immunity, and environmental surveillance.
  Wahjuhono Gendro et al. The Journal of infectious diseases 2014 Nov S347-52
• Detection of vaccine-derived polioviruses in Mexico using environmental surveillance.
  Esteves-Jaramillo Alejandra et al. J. Infect. Dis. 2014 Nov 1. 210 Suppl 1S315-23
• Environmental surveillance for polioviruses in the Global Polio Eradication Initiative.
  Asghar Humayun et al. The Journal of infectious diseases 2014 Nov S294-303
• Review of global rotavirus strain prevalence data from six years post vaccine licensure surveillance: is there evidence of strain selection from vaccine pressure?
  Dóró Renáta et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2014 Dec 446-61
• Molecular surveillance of rotavirus strains circulating in Yaoundé, Cameroon, September 2007-December 2012.
  Boula Angeline et al. Infect. Genet. Evol. 2014 Dec 28470-5
• Molecular surveillance of rotavirus infection in Bangui, Central African Republic, October 2011-September 2013.
  Banga-Mingo Virginie et al. Infect. Genet. Evol. 2014 Dec 28476-9
• Approach to molecular characterization of partially and completely untyped samples in an Indian rotavirus surveillance program.
  Babji Sudhir et al. Vaccine 2014 Aug 11. 32 Suppl 1A84-8
• State-based surveillance for selected hemoglobinopathies.
  Hulihan Mary M et al. Genet. Med. 2015 Feb 17(2) 125-30
• Challenges of using molecular serotyping for surveillance of pneumococcal disease.
  Magomani Victoria et al. J. Clin. Microbiol. 2014 Sep 52(9) 3271-6
• Molecular surveillance of rotavirus infection in the Democratic Republic of the Congo August 2009 to June 2012.
  Pukuta Elizabeth S et al. Pediatr. Infect. Dis. J. 2014 Apr 33(4) 355-9
• The use of US health insurance data for surveillance of rare disorders: hereditary hemorrhagic telangiectasia.
  Grosse Scott D et al. Genet. Med. 2014 Jan 16(1) 33-9
• Malaria diagnostics and surveillance in the post-genomic era.
  Lucchi N W et al. Public Health Genomics 2013 16(1-2) 37-43
• Surveillance of parapoxvirus among ruminants in Virginia and Connecticut.
  Roess A A et al. Zoonoses Public Health 2013 Dec 60(8) 543-8
• Application of mass spectrometry to molecular surveillance of hepatitis B and C viral infections.
  Ganova-Raeva Lilia M et al. Antivir. Ther. (Lond.) 2012 17(7 Pt B) 1477-82
• Molecular surveillance of hepatitis C.
  Khudyakov Yury et al. Antivir. Ther. (Lond.) 2012 17(7 Pt B) 1465-70
• Genotyping of rubella virus RNA in sera and dried blood spots collected during routine surveillance and in archival sera.
  Zheng Qi et al. J. Virol. Methods 2013 Feb 187(2) 284-7
• Using routinely reported tuberculosis genotyping and surveillance data to predict tuberculosis outbreaks.
  Althomsons Sandy P et al. PLoS ONE 2012 7(11) e48754
• Molecular surveillance of Cryptosporidium spp., Giardia duodenalis, and Enterocytozoon bieneusi by genotyping and subtyping parasites in wastewater.
  Li Na et al. PLoS Negl Trop Dis 2012 6(9) e1809
• Monitoring HPV type-specific prevalence over time through clinic-based surveillance: a perspective on vaccine effectiveness.
  Gaffga N H et al. Vaccine 2012 Mar 2. 30(11) 1959-64
• Optimization of a low cost and broadly sensitive genotyping assay for HIV-1 drug resistance surveillance and monitoring in resource-limited settings.
  Zhou Zhiyong et al. PLoS ONE 2011 6(11) e28184
• Serology as an adjunct to polymerase chain reaction assays for surveillance of acute respiratory virus infections.
  Sawatwong Pongpun et al. Clin. Infect. Dis. 2012 Feb 1. 54(3) 445-6
• Tuberculosis genotyping information management system: enhancing tuberculosis surveillance in the United States.
  Ghosh Smita et al. Infect. Genet. Evol. 2012 Jun 12(4) 782-8
• Identifying host genetic risk factors in the context of public health surveillance for invasive pneumococcal disease.
  Lingappa Jairam R et al. PLoS ONE 2011 6(8) e23413
• Novel surveillance network for norovirus gastroenteritis outbreaks, United States.
  Vega Everardo et al. Emerging Infect. Dis. 2011 Aug 17(8) 1389-95
• Azole resistance in Aspergillus fumigatus isolates from the ARTEMIS global surveillance study is primarily due to the TR/L98H mutation in the cyp51A gene.
  Lockhart Shawn R et al. Antimicrob. Agents Chemother. 2011 Sep 55(9) 4465-8

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