Publication Date: Feb 21, 2019
About Advanced Molecular Detection Clips
Clips are selected weekly from a variety of sources, including PubMed, journal tables of contents, and online media. Special emphasis is given to the use of next-generation genetic sequencing in infectious disease public health surveillance, investigation, and development of new diagnostics and interventions. The collection is not comprehensive but aims to capture highlights, while surveying a wide range of topics. CDC-authored articles are flagged. Items marked I&E address aspects of implementation or evaluation in clinical or public health practice. View Data Selection Criteria
Advanced Molecular Detection Clips Content
NEWS
- Omics Analyses Yield Virulence Data on Group A Streptococcus Strains
GenomeWeb, Feb 19, 2019. - Vaccines don’t work against some viruses. CRISPR might one day fix that
Begley S. STAT News, Feb 19, 2019. - Faster, better, cheaper: the rise of CRISPR in disease detection
Maxmen A. Nature, Feb 19, 2019. - Cervical Microbes Potentially Tied to Viral Infections, High-Grade Lesions
GenomeWeb, Feb 20, 2019. - Proteogenomic Analysis IDs Neutrophil Diseases Undiagnosed by Sequencing Alone
Bonislawski A. GenomeWeb, Feb 19, 2019.
EVENTS / TRAINING / WEB RESOURCES
- Women's BioData Science Hackathon May 8th-10th
(announcement) National Library of Medicine, Feb 14, 2019. Proposals due Feb 25, 2019.
POLICY
- International Biological Reference Preparations for Epidemic Infectious Diseases.
Rampling Tommy et al. Emerging infectious diseases 2019 Feb (2) 205-211
CONCEPTS / COMMENTS
- Genomics and High-Consequence Infectious Diseases: A Scoping Review of Emerging Science and Potential Ethical Issues.
Boyce Angie M et al. Health security 2019 Feb - Enterovirus D68-Associated Acute Flaccid Myelitis: Rising to the Clinical and Research Challenges.
Messacar Kevin et al. JAMA 2019 Feb - Meeting the challenge of tick-borne disease control: A proposal for 1000 Ixodes genomes.
Murgia Maria V et al. Ticks and tick-borne diseases 2019 01 (1) 213-218
METHODS / TOOLS
- Next-Generation Sequencing of Infectious Pathogens.
Gwinn Marta et al. JAMA 2019 Feb
- Platforms and Analytical Tools Used in Nucleic Acid Sequence-Based Microbial Genotyping Procedures.
MacCannell Duncan et al. Microbiology spectrum 2019 Jan (1) - Strengthening laboratory surveillance of viral pathogens: Experiences and lessons learned building next-generation sequencing capacity in Ghana.
Marine Rachel L et al. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2019 Feb - Challenges of Next-Generation Sequencing targeting Anaerobes.
Conrads Georg et al. Anaerobe 2019 Feb - Impact of long-term storage of clinical samples collected from 1996 to 2017 on RT-PCR detection of norovirus.
Cannon Jennifer L et al. Journal of virological methods 2019 Feb - Statistical outbreak detection by joining medical records and pathogen similarity.
Miller James K et al. Journal of biomedical informatics 2019 Feb 103126 - Precision epidemiology for infectious disease control.
Ladner Jason T et al. Nature medicine 2019 Feb (2) 206-211
EVOLUTION / ECOLOGY / POPULATIONS
- Population genomics of pneumococcal carriage in Massachusetts children following introduction of PCV-13.
Mitchell Patrick K et al. Microbial genomics 2019 Feb - Human-Origin Influenza A(H3N2) Reassortant Viruses in Swine, Southeast Mexico.
Nelson Martha I et al. Emerging infectious diseases 2019 Apr (4) - Emergence of divergent enterovirus (EV) D68 sub-clade D1 strains, northern Italy, September to October 2018.
Pellegrinelli Laura et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Feb (7) - Changes in norovirus genotype diversity in gastroenteritis outbreaks in Alberta, Canada: 2012-2018.
Hasing Maria E et al. BMC infectious diseases 2019 Feb (1) 177 - Genomic sequencing, evolution and molecular epidemiology of rabies virus.
Brunker K et al. Revue scientifique et technique (International Office of Epizootics) 2018 Aug (2) 401-408 - New world origin of canine distemper: Interdisciplinary insights.
Uhl Elizabeth W et al. International journal of paleopathology 2019 Mar 266-278 - Whole genome characterisation of G11P[25] and G9P[19] rotavirus A strains from adult patients with diarrhoea in Nepal.
Takatsuki Hanae et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Feb 246-254 - Population Structure and Genetic Diversity of Sporothrix globosa in China According to 10 Novel Microsatellite Loci.
Gong Jie et al. Journal of medical microbiology 2019 Feb (2) 248-254 - Insights into the Unique Nature of the East Asian Clade of the Emerging Pathogenic Yeast, Candida auris .
Welsh Rory M et al. Journal of clinical microbiology 2019 Feb - First Draft Genome Sequence of Leishmania (Viannia) lainsoni Strain 216-34, Isolated from a Peruvian Clinical Case.
Lin Wuling et al. Microbiology resource announcements 2019 Feb (6) - Pathogens in fleas collected from cats and dogs: distribution and prevalence in the UK.
Abdullah Swaid et al. Parasites & vectors 2019 Feb (1) 71
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
- Conjugal Transfer, Whole Genome Sequencing, and Plasmid Analysis of Four mcr-1 -bearing Isolates from U.S. Patients.
Zhu Wenming et al. Antimicrobial agents and chemotherapy 2019 Feb - The Clinical and Molecular Epidemiology of CTX-M-9 Group Producing Enterobacteriaceae Infections in Children.
Logan Latania K et al. Infectious diseases and therapy 2019 Feb - Convergence of virulence and MDR in a single plasmid vector in MDR Klebsiella pneumoniae ST15.
Lam Margaret M C et al. The Journal of antimicrobial chemotherapy 2019 Feb - High incidence of MDR and XDR Pseudomonas aeruginosa isolates obtained from patients with ventilator-associated pneumonia in Greece, Italy and Spain as part of the MagicBullet clinical trial.
Pérez Astrid et al. The Journal of antimicrobial chemotherapy 2019 Feb - Whole-genome sequences of multidrug-resistant Escherichia coli in South-Kivu Province, Democratic Republic of Congo: characterization of phylogenomic changes, virulence and resistance genes.
Irenge Leonid M et al. BMC infectious diseases 2019 Feb (1) 137 - Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis
Kachroo P, et al. Nat Genet, FEb 18, 2019. - Genomic correlates of extraintestinal infection are linked with changes in cell morphology in Campylobacter jejuni.
Wheeler Nicole E et al. Microbial genomics 2019 Feb - Whole Genome Sequence Analysis of Burkholderia contaminans FFH2055 Strain Reveals the Presence of Putative β-Lactamases.
Degrossi José J et al. Current microbiology 2019 Feb - A unique insight into the MiRNA profile during genital chlamydial infection.
Benyeogor Ifeyinwa et al. BMC genomics 2019 Feb (1) 143 - Occurrence of disputed rpoB mutations among Mycobacterium tuberculosis isolates phenotypically susceptible to rifampicin in a country with a low incidence of multidrug-resistant tuberculosis.
Al-Mutairi Noura M et al. BMC infectious diseases 2019 Jan (1) 3 - Molecular epidemiology of an enterovirus A71 outbreak associated with severe neurological disease, Spain, 2016.
González-Sanz Rubén et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Feb (7) - Exome-wide association of deltamethrin resistance in Aedes aegypti from Mexico.
Saavedra-Rodriguez Karla et al. Insect molecular biology 2019 Feb
DETECTION / DIAGNOSIS
- Analytical and clinical validation of a microbial cell-free DNA sequencing test for infectious disease.
Blauwkamp Timothy A et al. Nature microbiology 2019 Feb - EPIDEMIOLOGICAL TYPING OF SERRATIA MARCESCENS BY WHOLE GENOME MULTI-LOCUS SEQUENCE TYPING.
Rossen John W A et al. Journal of clinical microbiology 2019 Feb - Rapid molecular detection of macrolide resistance.
Nelson Megan M et al. BMC infectious diseases 2019 Feb (1) 144 - Genetic evidence of Coxiella burnetii infection in acute febrile illnesses in Iran.
Esmaeili Saber et al. PLoS neglected tropical diseases 2019 Feb (2) e0007181 - LiSEQ - whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe.
Painset Anaïs et al. Microbial genomics 2019 Feb - Development of a Novel Loop-Mediated Isothermal Amplification Method to Detect Guiana Extended-Spectrum (GES) β-Lactamase Genes in Pseudomonas aeruginosa .
Takano Chika et al. Frontiers in microbiology 2019 25 - Detection of Leptospira in Urban Swedish Rats: Pest Control Interventions as a Promising Source of Rats Used for Surveillance.
Strand Tanja M et al. Vector borne and zoonotic diseases (Larchmont, N.Y.) 2019 Feb - Optimizing molecular surveillance of mumps genotype G viruses.
Bodewes Rogier et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019 Feb 230-234 - Human Sapovirus among Outpatients with Acute Gastroenteritis in Spain: A One-Year Study.
Varela Miguel F et al. Viruses 2019 Feb (2) - SIMULTANEOUS DETECTION AND DIFFERENTIATION BETWEEN WILD-TYPE AND VACCINE MEASLES VIRUS BY A MULTIPLEX REAL-TIME RT-PCR ASSAY.
Pabbaraju Kanti et al. Journal of clinical microbiology 2019 Feb - Comparison of FTD® respiratory pathogens 33 and a singleplex CDC assay for the detection of respiratory viruses: A study from Cameroon.
Kenmoe Sebastien et al. Diagnostic microbiology and infectious disease 2019 Jan - Detection and characterization of type B influenza virus from influenza-like illness cases during the 2017-2018 winter influenza season in Beijing, China.
Zhu Dong et al. Archives of virology 2019 Feb - Genetic Characterization of Fungi Isolated from Environmental Samples: A Molecular Surveillance Study of Public Health Importance.
Sulaiman Irshad M et al. Journal of AOAC International 2019 Feb - Cryptococcus deuterogattii VGIIa Infection Associated with Travel to the Pacific Northwest Outbreak Region in an Anti-Granulocyte-Macrophage Colony-Stimulating Factor Autoantibody-Positive Patient in the United States.
Applen Clancey Shelly et al. mBio 2019 Feb (1) - Trichophyton mentagrophytes - a new genotype of zoophilic dermatophyte causes sexually transmitted infections.
Kupsch Christiane et al. Journal der Deutschen Dermatologischen Gesellschaft = Journal of the German Society of Dermatology : JDDG 2019 Feb - Identification of Pythium insidiosum complex by matrix-assisted laser desorption ionization-time of flight mass spectrometry.
Mani Rinosh et al. Journal of medical microbiology 2019 Feb - Parasite specific 7SL-derived small RNA is an effective target for diagnosis of active trypanosomiasis infection.
Chiweshe Stephen M et al. PLoS neglected tropical diseases 2019 Feb (2) e0007189 - Evaluation of Multilocus Sequence Typing of Cyclospora cayetanensis based on microsatellite markers.
Hofstetter Jessica N et al. Parasite (Paris, France) 2019 3
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
- Automated data mining of the electronic health record for investigation of healthcare-associated outbreaks.
Sundermann Alexander J et al. Infection control and hospital epidemiology 2019 Feb 1-6 - Evaluation of an "all-in-one" seven-day WGS solution in the investigation of a Staphylococcus aureus outbreak in a neonatal Intensive Care Unit.
Rouard Caroline et al. The Journal of hospital infection 2019 Feb - Multidrug-resistant Nontyphoidal Salmonella Hotspots as Targets for Vaccine Use in Management of Infections in Endemic Settings.
Kariuki Samuel et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Feb (Supplement_1) S10-S15 - Expansion of Vancomycin-resistant Enterococcus faecium in an academic tertiary hospital in Southwest Germany: a large-scale whole genome-based outbreak investigation.
Liese Jan et al. Antimicrobial agents and chemotherapy 2019 Feb - Outbreak of respiratory illness associated with human adenovirus type 7 among persons attending Officer Candidates School, Quantico, Virginia, 2017.
Bautista-Gogel Jennifer et al. The Journal of infectious diseases 2019 Feb - Onward transmission of multiple HIV-1 unique recombinant forms among men who have sex with men in Beijing, China.
Liu Yongjian et al. Journal of acquired immune deficiency syndromes (1999) 2019 Feb - Molecular epidemiology of acute HCV infection in HIV-positive patients from Hong Kong, Taipei, Tokyo.
Sun Hsin-Yun et al. Liver international : official journal of the International Association for the Study of the Liver 2019 Feb
HOST-MICROBE INTERACTIONS
- The European Society for Immunodeficiencies (ESID) Registry Working Definitions for the Clinical Diagnosis of Inborn Errors of Immunity.
Seidel Markus G et al. The journal of allergy and clinical immunology. In practice 2019 Feb - Effects of genetic variability on rifampicin and isoniazid pharmacokinetics in South African patients with recurrent tuberculosis.
Naidoo Anushka et al. Pharmacogenomics 2019 Feb - The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.
Stanaway Ian B et al. Genetic epidemiology 2019 02 (1) 63-81 - Macrophage Activation Marker Soluble CD163 Associated with Fatal and Severe Ebola Virus Disease in Humans 1 .
McElroy Anita K et al. Emerging infectious diseases 2019 Feb (2) 290-298 - Higher abundance of enterovirus A species in the gut of children with islet autoimmunity.
Kim Ki Wook et al. Scientific reports 2019 Feb (1) 1749 - Mutations in Hepatitis D Virus Allow it to Escape Detection by CD8+ T Cells and Evolve at the Population Level.
Karimzadeh Hadi et al. Gastroenterology 2019 Feb - Molecular epidemiology and host genetics of norovirus and rotavirus infections in Portuguese elderly living in aged care homes.
Piedade João et al. Journal of medical virology 2019 Feb
Note:
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice.Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Public Health Genomics to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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