| Query Trace: Microbiome[orginal query] |
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| Restriction enzyme digestion of host DNA enhances universal detection of parasitic pathogens in blood via targeted amplicon deep sequencing. Briana R Flaherty, Eldin Talundzic, Joel Barratt, Kristine J Kines, Christian Olsen, Meredith Lane, Mili Sheth, and Richard S Bradbury Microbiome 2018 Sep (1) 164  |
| Effect of Antibiotic-Mediated Microbiome Modulation on Rotavirus Vaccine Immunogenicity: A Human, Randomized-Control Proof-of-Concept Trial. Vanessa C Harris, Bastiaan W Haak, Scott A Handley, Baoming Jiang, Daniel E Velasquez, Barry L Hykes, Lindsay Droit, Guy A M Berbers, Elles Marleen Kemper, Ester M M van Leeuwen, Michael Boele van Hensbroek, and Willem Joost Wiersinga Cell host & microbe 2018 Aug (2) 197-207.e4  |
| Impact of the griffithsin anti-HIV microbicide and placebo gels on the rectal mucosal proteome and microbiome in non-human primates. Lauren Girard, Kenzie Birse, Johanna B Holm, Pawel Gajer, Mike S Humphrys, David Garber, Patricia Guenthner, Laura Noël-Romas, Max Abou, Stuart McCorrister, Garrett Westmacott, Lin Wang, Lisa C Rohan, Nobuyuki Matoba, Janet McNicholl, Kenneth E Palmer, Jacques Ravel, and Adam D Burgener Scientific reports 2018 May (1) 8059  |
| New York City House Mice (Mus musculus) as Potential Reservoirs for Pathogenic Bacteria and Antimicrobial Resistance Determinants. Simon H Williams, Xiaoyu Che, Ashley Paulick, Cheng Guo, Bohyun Lee, Dorothy Muller, Anne-Catrin Uhlemann, Franklin D Lowy, Robert M Corrigan, and W Ian Lipkin mBio 2018 Apr (2)  |
| Whole metagenome sequencing reveals links between mosquito microbiota and insecticide resistance in malaria vectors. Nsa Dada, Mili Sheth, Kelly Liebman, Jesus Pinto, and Audrey Lenhart Scientific reports 2018 Feb 8(1) 2084  |
| The Female Genital Tract Microbiome Is Associated With Vaginal Antiretroviral Drug Concentrations in Human Immunodeficiency Virus-Infected Women on Antiretroviral Therapy. Renee Donahue Carlson, Anandi N Sheth, Timothy D Read, Michael B Frisch, C Christina Mehta, Amy Martin, Richard E Haaland, Anar S Patel, Chou-Pong Pau, Colleen S Kraft, and Igho Ofotokun The Journal of infectious diseases 2017 Oct  |
| Microbiome sharing between children, livestock and household surfaces in western Kenya. Emily Mosites, Matt Sammons, Elkanah Otiang, Alexander Eng, Cecilia Noecker, Ohad Manor, Sarah Hilton, Samuel M Thumbi, Clayton Onyango, Gemina Garland-Lewis, Douglas R Call, M Kariuki Njenga, Judith N Wasserheit, Jennifer A Zambriski, Judd L Walson, Guy H Palmer, Joel Montgomery, Elhanan Borenstein, Richard Omore, and Peter M Rabinowitz PloS one 2017 (2) e0171017  |
| Restoring the Duality between Principal Components of a Distance Matrix and Linear Combinations of Predictors, with Application to Studies of the Microbiome. Glen A Satten, Robert E Tyx, Angel J Rivera, and Stephen Stanfill PloS one 2017 12(1) e0168131  |
| The gut microbiota in conventional and serrated precursors of colorectal cancer. Brandilyn A Peters, Christine Dominianni, Jean A Shapiro, Timothy R Church, Jing Wu, George Miller, Elizabeth Yuen, Hal Freiman, Ian Lustbader, James Salik, Charles Friedlander, Richard B Hayes, and Jiyoung Ahn Microbiome 2016 Dec (1) 69  |
| The rectal mucosa and condomless receptive anal intercourse in HIV-negative MSM: implications for HIV transmission and prevention. C F Kelley, C S Kraft, T Jb de Man, C Duphare, H-W Lee, J Yang, K A Easley, G K Tharp, M J Mulligan, P S Sullivan, S E Bosinger, and R R Amara Mucosal immunology 2016 Nov  |
| Association of sputum microbiota profiles with severity of community-acquired pneumonia in children. Melinda M Pettigrew, Janneane F Gent, Yong Kong, Martina Wade, Shane Gansebom, Anna M Bramley, Seema Jain, Sandra L R Arnold, and Jonathan A McCullers BMC infectious diseases (1) 317 |
| Intestinal microbiome disruption in patients in a long-term acute care hospital: A case for development of microbiome disruption indices to improve infection prevention. Alison Laufer Halpin, Tom J B de Man, Colleen S Kraft, K Allison Perry, Austin W Chan, Sung Lieu, Jeffrey Mikell, Brandi M Limbago, and L Clifford McDonald American journal of infection control 2016 Feb  |
| Characterizing the fecal microbiota of infants with botulism. T Brian Shirey, Janet K Dykes, Carolina Lúquez, Susan E Maslanka, and Brian H Raphael Microbiome 2015 (1) 54  |
| Beta-diversity metrics of the upper digestive tract microbiome are associated with body mass index. Shih-Wen Lin, Neal D Freedman, Jianxin Shi, Mitchell H Gail, Emily Vogtmann, Guoqin Yu, Vanja Klepac-Ceraj, Bruce J Paster, Bruce A Dye, Guo-Qing Wang, Wen-Qiang Wei, Jin-Hu Fan, You-Lin Qiao, Sanford M Dawsey, and Christian C Abnet Obesity (Silver Spring) 2015 Apr (4) 862-9 |
| Microbiota that affect risk for shigellosis in children in low-income countries. Brianna Lindsay, Joe Oundo, M Anowar Hossain, Martin Antonio, Boubou Tamboura, Alan W Walker, Joseph N Paulson, Julian Parkhill, Richard Omore, Abu S G Faruque, Suman Kumar Das, Usman N Ikumapayi, Mitchell Adeyemi, Doh Sanogo, Debasish Saha, Samba Sow, Tamer H Farag, Dilruba Nasrin, Shan Li, Sandra Panchalingam, Myron M Levine, Karen Kotloff, Laurence S Magder, Laura Hungerford, Halvor Sommerfelt, Mihai Pop, James P Nataro, and O Colin Stine Emerging infectious diseases 2015 Feb 21(2) 242-50  |
| Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition. Mihai Pop, Alan W Walker, Joseph Paulson, Brianna Lindsay, Martin Antonio, M Anowar Hossain, Joseph Oundo, Boubou Tamboura, Volker Mai, Irina Astrovskaya, Hector Corrada Bravo, Richard Rance, Mark Stares, Myron M Levine, Sandra Panchalingam, Karen Kotloff, Usman N Ikumapayi, Chinelo Ebruke, Mitchell Adeyemi, Dilruba Ahmed, Firoz Ahmed, Meer Taifur Alam, Ruhul Amin, Sabbir Siddiqui, John B Ochieng, Emmanuel Ouma, Jane Juma,Euince Mailu, Richard Omore, J Glenn Morris, Robert F Breiman, Debasish Saha, Julian Parkhill, James P Nataro, and O Colin Stine Genome biology 2014 (6) R76  |
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