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From CDC-Authored Genomics Publication Database

This database contains CDC-authored publications in public health genomics including infectious diseases, newborn screening, reproductive health, genetic testing, cancer, chronic diseases, birth defects and developmental disabilities, environmental and occupational health as well as laboratory, bioinformatics and statistical methods.

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• Multistate outbreak of Salmonella Paratyphi B variant L(+) tartrate(+) and Salmonella Weltevreden infections linked to imported frozen raw tuna: USA, March-July 2015.  
  Hassan R et al. Epidemiology and infection 2018 Jun 1-7
• Protracted Outbreak of Salmonella Newport Infections Linked to Ground Beef: Possible Role of Dairy Cows - 21 States, 2016-2017.  
  Marshall Katherine E Heiman et al. MMWR. Morbidity and mortality weekly report 2018 Apr (15) 443-446
• Multistate Outbreak of Salmonella Virchow Infections Linked to a Powdered Meal Replacement Product - United States, 2015-2016.  
  Gambino-Shirley Kelly J et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Mar
• Salmonella epidemiology: A whirlwind of change.  
  Besser John M et al. Food microbiology 2018 May 55-59
• Multi-drug resistant non-typhoidal Salmonella associated with invasive disease in western Kenya.  
  Akullian Adam et al. PLoS neglected tropical diseases 2018 Jan (1) e0006156
• Multistate Outbreak of Salmonella Anatum Infections Linked to Imported Hot Peppers - United States, May-July 2016.  
  Hassan Rashida et al. MMWR. Morbidity and mortality weekly report 2017 Jun (25) 663-667
• Comparative Analysis of Extended Spectrum Beta- Lactamase CTX-M-65-Producing Salmonella Infantis Isolates from Humans, Food Animals, and Retail Chickens in the United States.  
  Tate Heather et al. Antimicrobial agents and chemotherapy 2017 May
• Utility of Combining Whole Genome Sequencing with Traditional Investigational Methods To Solve Foodborne Outbreaks of Salmonella Infections Associated with Chicken: A New Tool for Tackling This Challenging Food Vehicle.  
  Crowe Samuel J et al. Journal of food protection 2017 Mar 654-660
• Outbreak of Salmonella Oslo Infections Linked to Persian Cucumbers - United States, 2016.  
  Bottichio Lyndsay et al. MMWR. Morbidity and mortality weekly report 2016 Dec (5051) 1430-1433
• Laboratory Investigation of <i>Salmonella enterica</i> serovar Poona Outbreak in California: Comparison of Pulsed-Field Gel Electrophoresis (PFGE) and Whole Genome Sequencing (WGS) Results.  
  Kozyreva Varvara K et al. PLoS currents 2016 Nov
• Complete, Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Typhimurium Strains Isolated from Human and Bovine Sources.  
  Nguyen Scott V et al. Genome announcements 2016 Nov (6)
• Characteristics of Clusters of Salmonella and Escherichia coli O157 Detected by Pulsed-Field Gel Electrophoresis that Predict Identification of Outbreaks.  
  Jones Timothy F et al. Foodborne pathogens and disease 2016 Sep
• Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings.  
  Feasey Nicholas A et al. Nature genetics 2016 Aug
• The use of whole genome sequencing for detecting antimicrobial resistance in nontyphoidal Salmonella.  
  McDermott Patrick F et al. Antimicrobial agents and chemotherapy 2016 Jul
• Turtles as a Possible Reservoir of Nontyphoidal Salmonella in Shanghai, China.  
  Zhang Jianmin et al. Foodborne pathogens and disease 2016 Jun
• Complete and Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Anatum Isolates from Human and Bovine Sources.  
  Nguyen Scott V et al. Genome announcements 2016 4(3)
• Genomic and Phenotypic Analysis Reveal the Emergence of an Atypical Salmonella Senftenberg Variant in China.  
  Abd El Ghany Moataz et al. Journal of clinical microbiology 2016 May
• A Multicountry Molecular Analysis of Salmonella enterica Serovar Typhi With Reduced Susceptibility to Ciprofloxacin in Sub-Saharan Africa.  
  Al-Emran Hassan M et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Mar 62 Suppl 1S42-6
• Complete Closed Genome Sequences of Salmonella enterica subsp. enterica Serotypes Anatum, Montevideo, Typhimurium, and Newport, Isolated from Beef, Cattle, and Humans.  
  Harhay Dayna M et al. Genome announcements 2016 (1)
• Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events.  
  Wong Vanessa K et al. Nat. Genet. 2015 May 11.
• Salmonella serotype determination utilizing high-throughput genome sequencing data.  
  Zhang Shaokang et al. J. Clin. Microbiol. 2015 May 53(5) 1685-92
• Plasmid-mediated quinolone resistance in isolates of Salmonella enterica serotype Typhi, USA.  
  Sjölund-Karlsson Maria et al. Int. J. Antimicrob. Agents 2015 Jan 45(1) 88-90
• Genomic dissection of travel-associated extended-spectrum-beta-lactamase-producing Salmonella enterica serovar typhi isolates originating from the Philippines: a one-off occurrence or a threat to effective treatment of typhoid fever?  
  Hendriksen Rene S et al. J. Clin. Microbiol. 2015 Feb 53(2) 677-80
• Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis.  
  Deng Xiangyu et al. J. Clin. Microbiol. 2015 Jan 53(1) 212-8
• Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages.  
  Deng Xiangyu et al. Emerging Infect. Dis. 2014 Sep 20(9) 1481-9
• Comparative genomic analysis and virulence differences in closely related salmonella enterica serotype heidelberg isolates from humans, retail meats, and animals.  
  Hoffmann Maria et al. Genome Biol Evol 2014 May 6(5) 1046-68
• Genome Sequence of Salmonella enterica Serotype Tennessee Strain CDC07-0191, Implicated in the 2006-2007 Multistate Food-Borne Outbreak Linked to Peanut Butter in the United States.  
  Deng Xiangyu et al. Genome Announc 2013 1(3)
• Antimicrobial resistance genes in multidrug-resistant Salmonella enterica isolated from animals, retail meats, and humans in the United States and Canada.  
  Glenn LaShanda M et al. Microb. Drug Resist. 2013 Jun 19(3) 175-84
• Occurrence of ß-lactamase genes among non-Typhi Salmonella enterica isolated from humans, food animals, and retail meats in the United States and Canada.  
  Sjölund-Karlsson Maria et al. Microb. Drug Resist. 2013 Jun 19(3) 191-7
• Characterization of multidrug-resistant Salmonella enterica serovar heidelberg from a ground turkey-associated outbreak in the United States in 2011.  
  Folster Jason P et al. Antimicrob. Agents Chemother. 2012 Jun 56(6) 3465-6
• First NDM-positive Salmonella sp. strain identified in the United States.  
  Savard Patrice et al. Antimicrob. Agents Chemother. 2011 Dec 55(12) 5957-8
• Subtyping Salmonella enterica serovar enteritidis isolates from different sources by using sequence typing based on virulence genes and clustered regularly interspaced short palindromic repeats (CRISPRs).  
  Liu Fenyun et al. Appl. Environ. Microbiol. 2011 Jul 77(13) 4520-6

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