Last Posted: Jan 04, 2017
- Error rates, PCR recombination, and sampling depth in HIV-1 Whole Genome Deep Sequencing.
Zanini Fabio et al. Virus research 2016 Dec - HIV-1 Infection and Transmission Networks of Younger People in Chicago, Illinois, 2005-2011.
Morgan Ethan et al. Public health reports (Washington, D.C. : 1974) (1) 48-55 - Occupational HIV infection in a research laboratory with unknown mode of transmission: a case report.
Soria Alessandro et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Dec - Qualitative and quantitative HIV antibodies and viral reservoir size characterization in vertically infected children with virological suppression.
Brice Josephine et al. The Journal of antimicrobial chemotherapy 2016 Dec - Subtypes and risk behaviors among incident HIV cases in the Bangkok Men Who Have Sex with Men Cohort Study, Thailand, 2006-2015.
Lam Caitlin R et al. AIDS research and human retroviruses 2016 Dec - Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic.
Yebra Gonzalo et al. Scientific reports 2016 Dec 39489 - A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses.
Anderson Tavis K et al. mSphere 1(6) - Low abundance of colonic butyrate-producing bacteria in HIV infection is associated with microbial translocation and immune activation.
Dillon Stephanie M et al. AIDS (London, England) 2016 Dec - Fast Dissemination of New HIV-1 CRF02/A1 Recombinants in Pakistan.
Chen Yue et al. PloS one 2016 (12) e0167839 - HLA-B*57 and IFNL4-related polymorphisms are associated with protection against HIV-1 disease progression in controllers.
Dominguez-Molina B et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Dec - Severity of Respiratory Syncytial Virus Lower Respiratory Tract Infection with Viral Coinfection in HIV-uninfected Children.
Mazur Natalie I et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Dec - The hepatitis C virus nonstructural protein 3 Q80K polymorphism is frequently detected and transmitted among HIV-infected MSM in the Netherlands.
Newsum Astrid M et al. AIDS (London, England) 2017 Jan (1) 105-112 - HIV-1 drug resistance mutations emerging on darunavir therapy in PI-naive and -experienced patients in the UK.
El Bouzidi Kate et al. The Journal of antimicrobial chemotherapy 2016 Dec (12) 3487-3494 - Identification of the transcripts associated with spontaneous HCV clearance in individuals co-infected with HIV and HCV.
Chen Yue et al. BMC infectious diseases 2016 Nov (1) 693 - Use of whole genome sequencing in the Dutch Acute HCV in HIV study. A focus on transmitted antiviral resistance.
Christiansen Mette T et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2016 Sep - The rectal mucosa and condomless receptive anal intercourse in HIV-negative MSM: implications for HIV transmission and prevention.
Kelley C F et al. Mucosal immunology 2016 Nov
From CDC Information Database
This database includes general CDC public health information on specific diseases and health related topics. When available, the database displays genomic information from various CDC web pages. Users are also encouraged to conduct searches of CDC website for additional information.
- World AIDS Day 2016
- National Gay Men's HIV/AIDS Awareness Day
- National HIV Testing Day
- Asian & Pacific Islanders HIV/AIDS Awareness Day
- National Native HIV/AIDS Awareness Day
- National Native HIV/AIDS Awareness Day
From CDC-Authored Genomics Publication Database
This database contains CDC-authored publications in public health genomics including infectious diseases, newborn screening, reproductive health, genetic testing, cancer, chronic diseases, birth defects and developmental disabilities, environmental and occupational health as well as laboratory, bioinformatics and statistical methods.
- HIV-1 Infection and Transmission Networks of Younger People in Chicago, Illinois, 2005-2011.
Morgan Ethan et al. Public health reports (Washington, D.C. : 1974) (1) 48-55 - Subtypes and risk behaviors among incident HIV cases in the Bangkok Men Who Have Sex with Men Cohort Study, Thailand, 2006-2015.
Lam Caitlin R et al. AIDS research and human retroviruses 2016 Dec - Severity of Respiratory Syncytial Virus Lower Respiratory Tract Infection with Viral Coinfection in HIV-uninfected Children.
Mazur Natalie I et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Dec - The rectal mucosa and condomless receptive anal intercourse in HIV-negative MSM: implications for HIV transmission and prevention.
Kelley C F et al. Mucosal immunology 2016 Nov - Optimizing Infant HIV Diagnosis in Resource-Limited Settings: Modeling the Impact of HIV DNA PCR Testing at Birth.
Chiu Alexander et al. Journal of acquired immune deficiency syndromes (1999) 2016 Dec 73(4) 454-462
From Implementation Database
This database focuses on state and national activities that integrate genomics into public health programs and clinical practice
- Using Cancer Surveillance Data to Identify Breast Cancer Survivors and Relatives Who May Benefit from Screening Promotion and Education
[Disease: Breast Cancer|Ovarian Cancer; Type: Program; State: Michigan]
From Tier Table Database
CDC Office of Public Health Genomics (OPHG) conducts horizon scanning (a systematic research method to find and follow novel technologies appearing in the literature) to identify and track the progress of genomic tests as they move from research into clinical and public health practice. As an aid in organizing horizon scanning results, OPHG ranks genomic tests, and family health history applications, by levels of evidence. See detail.
| Disease/Disorder | Test to be Assessed | Intended Use | Tier Classified | Detail |
|---|---|---|---|---|
| HIV | HLA-B*5701 | Pharmacogenomic for abacavir | Tier 1  |
From HuGE Literature Finder Database
This database contains published literature on genetic associations and other human genome epidemiology
- HLA Class I and II alleles, heterozygosity and HLA-KIR interactions are associated with rates of genital HSV shedding and lesions.
Genes and immunity 2016 Dec 17 (7): 412-418.
Magaret A, Dong L, John M, Mallal S A, James I, Warren T, Gaudieri S, Koelle D M, Wald - A new 3p25 locus is associated with liver fibrosis progression in human immunodeficiency virus/hepatitis C virus-coinfected patients.
Hepatology (Baltimore, Md.) 2016 Nov 64 (5): 1462-1472.
Ulveling Damien, Le Clerc Sigrid, Cobat Aurélie, Labib Taoufik, Noirel Josselin, Laville Vincent, Coulonges Cédric, Carpentier Wassila, Nalpas Bertrand, Heim Markus H, Poynard Thierry, Cerny Andreas, Pol Stanislas, Bochud Pierre-Yves, Dabis François, Theodorou Ioannis, Lévy Yves, Salmon Dominique, Abel Laurent, Dominguez Stéphanie, Zagury Jean-François, , , - Renal function in HIV/HBV coinfected and HBV monoinfected patients on a long-term treatment with tenofovir in real life setting.
Clinical and experimental pharmacology & physiology 2016 Nov .
Milazzo Laura, Gervasoni Cristina, Falvella Felicia Stefania, Cattaneo Dario, Mazzali Cristina, Ronzi Paola, Binda Francesca, Cheli Stefania, Sollima Salvatore, Antinori Spinel - Higher prevalence of cancer related mutations 1762T/1764A and PreS deletions in hepatitis B virus (HBV) isolated from HBV/HIV co-infected compared to HBV-mono-infected Chinese adults.
Virus research 2016 Oct 227 88-95.
Li Kai-Wen, Kramvis Anna, Liang Shujia, He Xiang, Chen Qin-Yan, Wang Chao, Yang Qing-Li, Hu Li-Ping, Jia Hui-Hua, Fang Zhong-Li - Psoriasis risk SNPs and their association with HIV-1 control.
Human immunology 2016 Oct .
Nititham Joanne, Gupta Rashmi, Zeng Xue, Hartogensis Wendy, Nixon Douglas F, Deeks Steven G, Hecht Frederick M, Liao Wils
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