Metagenomics ► Public Health Genomics Knowledge Base (v1.0)

Public Health Genomics Knowledge Base (v1.0)

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Last Updated: Feb 17, 2016

• The Challenge and Potential of Metagenomics in the Clinic.
  Mulcahy-O'Grady Heidi et al. Frontiers in immunology 2016 29 (From Discoveries and Insights Database)
• The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics.
  Escobar-Zepeda Alejandra et al. Frontiers in genetics 2015 348 (From Discoveries and Insights Database)
• Using whole genome sequencing and metagenomics to identify and track tickborne pathogens
  (From CDC Information Database)
• Web Resources for Metagenomics Studies.
  Dudhagara Pravin, Bhavsar Sunil, Bhagat Chintan, Ghelani Anjana, Bhatt Shreyas, Patel Rajesh.Genomics, proteomics & bioinformatics 2015 Nov (From Advanced Molecular Detection Clips Database)
• Metagenomic cross-talk: the regulatory interplay between immunogenomics and the microbiome.
  Levy Maayan et al. Genome medicine (1) 120 (From Discoveries and Insights Database)
• Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis.
  Conceição-Neto Nádia, Zeller Mark, Lefrère Hanne, De Bruyn Pieter, Beller Leen, Deboutte Ward, Yinda Claude Kwe, Lavigne Rob, Maes Piet, Van Ranst Marc, Heylen Elisabeth, Matthijnssens Jelle.Scientific reports 2015 16532 (From Advanced Molecular Detection Clips Database)
• High-throughput functional screening reveals low frequency of antibiotic resistance genes in DNA recovered from the Upper Mississippi River.
  Staley Christopher et al. Journal of water and health 2015 Sep (3) 693-703 (From Discoveries and Insights Database)
• Metagenomic profiling of the viromes of plasma collected from blood donors with elevated serum alanine aminotransferase levels.
  Furuta Rika A, Sakamoto Hirotaka, Kuroishi Ayumu, Yasiui Kazuta, Matsukura Harumichi, Hirayama Fumiya.Transfusion 2015 Aug (8) 1889-99 (From Advanced Molecular Detection Clips Database)
• Metagenomics: A New Way to Illustrate the Crosstalk between Infectious Diseases and Host Microbiome.
  Zhang Yinfeng et al. International journal of molecular sciences 2015 (11) 26263-79 (FromDiscoveries and Insights Database)
• Subtractive assembly for comparative metagenomics, and its application to type 2 diabetes metagenomes.
  Wang Mingjie, Doak Thomas G, Ye Yuzhen.Genome biology 2015 243 (From Advanced Molecular Detection Clips Database)
• Challenges of the Unknown: Clinical Application of Microbial Metagenomics.
  Rose Graham, Wooldridge David J, Anscombe Catherine, Mee Edward T, Misra Raju V, Gharbia Saheer.International journal of genomics 2015 292950 (From Advanced Molecular Detection Clips Database)
• Identifying personal microbiomes using metagenomic codes.
  Franzosa Eric A, Huang Katherine, Meadow James F, Gevers Dirk, Lemon Katherine P, Bohannan Brendan J M, Huttenhower Curtis.Proc. Natl. Acad. Sci. U.S.A. 2015 Jun 2. (22) E2930-8 (From Advanced Molecular Detection Clips Database)
• Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples.
  Korem Tal, Zeevi David, Suez Jotham, Weinberger Adina, Avnit-Sagi Tali, Pompan-Lotan Maya, Matot Elad, Jona Ghil, Harmelin Alon, Cohen Nadav, Sirota-Madi Alexandra, Thaiss Christoph A, Pevsner-Fischer Meirav, Sorek Rotem, Xavier Ramnik J, Elinav Eran, Segal Eran.Science 2015 Sep 4. (6252) 1101-6 (From Advanced Molecular Detection Clips Database)
• A Comparison between Transcriptome Sequencing and 16S Metagenomics for Detection of Bacterial Pathogens in Wildlife.
  Razzauti Maria, Galan Maxime, Bernard Maria, Maman Sarah, Klopp Christophe, Charbonnel Nathalie, Vayssier-Taussat Muriel, Eloit Marc, Cosson Jean-François.PLoS Negl Trop Dis 2015 Aug (8) e0003929 (From Advanced Molecular Detection Clips Database)
• Next-generation sequencing in clinical virology: Discovery of new viruses.
  Datta Sibnarayan et al. World J Virol 2015 Aug 12. (3) 265-76 (From Discoveries and Insights Database)
• From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems.
  Garza Daniel R et al. Cell. Mol. Life Sci. 2015 Aug 9. (From Discoveries and Insights Database)
• Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome.
  Bikel Shirley et al. Comput Struct Biotechnol J 2015 390-401 (From Discoveries and Insights Database)
• Metagenomics: A new horizon in cancer research.
  Banerjee Joyita et al. Meta Gene 2015 Sep 84-9 (From Discoveries and Insights Database)
• Metagenomics of extreme environments.
  Cowan D A et al. Curr. Opin. Microbiol. 2015 Jun 97-102 (From Discoveries and Insights Database)
• Metagenomics meets time series analysis: unraveling microbial community dynamics.
  Faust Karoline et al. Curr. Opin. Microbiol. 2015 Jun 56-66 (From Discoveries and Insights Database)