Last Updated: Oct 27, 2016
- VSEARCH: a versatile open source tool for metagenomics.
Rognes Torbjørn, Flouri Tomáš, Nichols Ben, Quince Christopher, Mahé Frédéric.PeerJ 2016 e2584 - A comparative study of metagenomics analysis pipelines at the species level
- An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
- Functional Metagenomics as a Tool for Identification of New Antibiotic Resistance Genes from Natural Environments.
Dos Santos Débora Farage Knupp et al. Microbial ecology 2016 Oct - Extreme metagenomics using nanopore DNA sequencing: a field report from Svalbard, 78 N
- Toward Accurate and Quantitative Comparative Metagenomics.
Nayfach Stephen, Pollard Katherine S.Cell 2016 Aug (5) 1103-16 - Metagenomic applications in environmental monitoring and bioremediation.
Techtmann Stephen M et al. Journal of industrial microbiology & biotechnology 2016 Aug - Toward Accurate and Quantitative Comparative Metagenomics
S Nayfash et al, Cell, August 2016 - Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients.
Jitwasinkul Tossawan, Suriyaphol Prapat, Tangphatsornruang Sithichoke, Hansen Martin Asser, Hansen Lars Hestbjerg, Sørensen Søren Johannes, Permpikul Chairat, Rongrungruang Yong, Tribuddharat Chanwit.Journal of global antimicrobial resistance 2016 Apr 57-66 - Analysis of Metagenomics Next Generation Sequence Data for Fungal ITS Barcoding: Do You Need Advance Bioinformatics Experience?
Ahmed Abdalla.Frontiers in microbiology 2016 1061 - DUDes: a top-down taxonomic profiler for metagenomics.
Piro Vitor C, Lindner Martin S, Renard Bernhard Y.Bioinformatics (Oxford, England) 2016 Aug (15) 2272-80 - Recent progress in genetics, epigenetics and metagenomics unveils the pathophysiology of human obesity.
Pigeyre Marie et al. Clinical science (London, England : 1979) 2016 Jun 130(12) 943-86 - The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics.
Escobar-Zepeda Alejandra, Vera-Ponce de León Arturo, Sanchez-Flores Alejandro.Frontiers in genetics 2015 348 - An Improved Method for High Quality Metagenomics DNA Extraction from Human and Environmental Samples.
Bag Satyabrata, Saha Bipasa, Mehta Ojasvi, Anbumani D, Kumar Naveen, Dayal Mayanka, Pant Archana, Kumar Pawan, Saxena Shruti, Allin Kristine H, Hansen Torben, Arumugam Manimozhiyan, Vestergaard Henrik, Pedersen Oluf, Pereira Verima, Abraham Philip, Tripathi Reva, Wadhwa Nitya, Bhatnagar Shinjini, Prakash Visvanathan Gnana, Radha Venkatesan, Anjana R M, Mohan V, Takeda Kiyoshi, Kurakawa Takashi, Nair G Balakrish, Das Bhabatosh.Scientific reports 2016 26775 - Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling.
Flygare Steven, Simmon Keith, Miller Chase, Qiao Yi, Kennedy Brett, Di Sera Tonya, Graf Erin H, Tardif Keith D, Kapusta Aurélie, Rynearson Shawn, Stockmann Chris, Queen Krista, Tong Suxiang, Voelkerding Karl V, Blaschke Anne, Byington Carrie L, Jain Seema, Pavia Andrew, Ampofo Krow, Eilbeck Karen, Marth Gabor, Yandell Mark, Schlaberg Robert.Genome biology 2016 (1) 111
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