Pathogen Genomics
Bourbon Virus: Using Pathogen Genomics to Uncover a Hidden Virus - February 24, 2015
CDC information: What is Bourbon virus?
Tried-and-true and state-of-the-art combine to uncover a hidden virus, CDC Advanced Molecular Detection in Action
CDC paper: Novel thogotovirus species associated with febrile illness and death, United States, 2014
OI Kosoy et al. Emerging Infectious Diseases, March 2015
OI Kosoy et al. Emerging Infectious Diseases, March 2015
Genomics of Infectious Diseases: Progress and Challenges - November 26, 2014
Editorials:
Next-generation pathogen genomics
Weinstock GM, Peacock SJ. Genome Biology 2014, 15:528.
Next-generation pathogen genomics
Weinstock GM, Peacock SJ. Genome Biology 2014, 15:528.
Microbial sequencing to improve individual and population health
Peacock SJ, Weinstock CM. Genome Medicine 2014, 6:103.
Peacock SJ, Weinstock CM. Genome Medicine 2014, 6:103.
Stopping outbreaks with real-time genomic epidemiology
Tang P, Gardy JL. Genome Medicine 2014, 6:104.
Tang P, Gardy JL. Genome Medicine 2014, 6:104.
Epidemiologic data and pathogen genome sequences: a powerful synergy for public health
Grad Y, Lipsitch M. Genome Biology 2014, 15:538.
Grad Y, Lipsitch M. Genome Biology 2014, 15:538.
Genomic analysis of emerging pathogens: methods, application and future trends
Lucy M Li, et al. Genome Biology, November 2014
Lucy M Li, et al. Genome Biology, November 2014
Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses in clinical and biological samples
Christian B Matranga et al. Genome Biology, November 2014
Christian B Matranga et al. Genome Biology, November 2014
Translating genomics research into control of tuberculosis: lessons learned and future prospects
Warner DF, Mizrahi V. Genome Biology 2014, 15:514.
Warner DF, Mizrahi V. Genome Biology 2014, 15:514.
Empowering African genomics for infectious disease control
Folarin OA, et al. Genome Biology 2014, 15:515.
Folarin OA, et al. Genome Biology 2014, 15:515.
Genomics and infectious disease: a call to identify the ethical, legal and social implications for public health and clinical practice
Geller G, et al. Genome Medicine 2014, 6:106.
Geller G, et al. Genome Medicine 2014, 6:106.
Pathogen Genome Sequencing: Public Health Applications - October 22, 2014
CDC Advanced Molecular Detection Initiative: Imagine doing a 10,000-piece jigsaw puzzle in the time it takes to finish a 100-piece puzzle. Apply that to infectious disease control, and that’s AMD at work. Now imagine putting together that 10,000-piece puzzle when key pieces are missing, disease is spreading, and people are dying. AMD gives CDC scientists the “key pieces” they need to protect people from ever-changing infectious disease threats
Genomic polish for shoe-leather epidemiology
Steven Y. C. Tong. Nature Reviews Microbiology 11, 8 (2013)
Steven Y. C. Tong. Nature Reviews Microbiology 11, 8 (2013)
In Snow's footsteps: Commentary on shoe-leather and applied epidemiology
Denise Koo and Stephen B. Thacker. Epidemiologic Reviews (2010)
Denise Koo and Stephen B. Thacker. Epidemiologic Reviews (2010)
Sherlock genomes — viral investigator
Sarah E. Smith & Rachael S. Wash Nature Reviews Microbiology 11, 150 (2013)
Sarah E. Smith & Rachael S. Wash Nature Reviews Microbiology 11, 150 (2013)
High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity.
Nature Reviews Microbiology10, 599-606 (2012)
Nature Reviews Microbiology10, 599-606 (2012)
Transforming clinical microbiology with bacterial genome sequencing
Nature Reviews Genetics13, 601-612 (2012)
Nature Reviews Genetics13, 601-612 (2012)
Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions
W. Florian Fricke & David A. Rasko. Nature Reviews Genetics 15, 49-55 (2014)
W. Florian Fricke & David A. Rasko. Nature Reviews Genetics 15, 49-55 (2014)
Pathogen Genomics: Utility in Healthcare and Public Health - June 5, 2014
ePathGen - a new e-learning package in pathogen genomics
Eurosurveillance, Volume 19, Issue 21, 29 May 2014
Eurosurveillance, Volume 19, Issue 21, 29 May 2014
CDC information: Pathogen genomics has changed the landscape of the fight against infectious diseases
FDA Consumer Information: Whole Genome Sequencing Helps Identify Dangerous Bacteria
GenomeTrakr helps FDA identify dangerous bacteria, Health News Digest, Jun 2
Beating the bugs: The pathogen genomics revolution, Leila Lehushi, PHG Foundation, May 2014
Health care: Bring microbial sequencing to hospitals, Sharon Peacock Nature News, May 22
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