E. Coli
E. Coli: Public Health and Genomic Insights - July 1, 2015
CDC Info
- E.coli (Escherichia coli)
- Draft whole-genome sequences of 10 enterotoxigenic Escherichia coli serogroup O6 strains.
Pattabiraman V et al.Genome Announc 2015 (3)
Bacterial factors associated with lethal outcome of enteropathogenic Escherichia coli infection: Genomic case-control studies.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Donnenberg MS et al.PLoS Negl Trop Dis 2015 May 9(5) e0003791
Donnenberg MS et al.PLoS Negl Trop Dis 2015 May 9(5) e0003791
Draft whole-genome sequences of 10 enterotoxigenic Escherichia coli serogroup O6 strains.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Pattabiraman V et al. Genome Announc 2015 (3)
Pattabiraman V et al. Genome Announc 2015 (3)
CDC information: E.coli (Escherichia coli)
Although most strains of E. coli are harmless, others can make you sick. Some kinds of E. coli can cause diarrhea, while others cause urinary tract infections, respiratory illness and pneumonia, and other illnesses
Although most strains of E. coli are harmless, others can make you sick. Some kinds of E. coli can cause diarrhea, while others cause urinary tract infections, respiratory illness and pneumonia, and other illnesses
Whole genome sequencing for national surveillance of shiga toxin producing Escherichia coli O157.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Dallman TJ et al. Clin. Infect. Dis. 2015 Apr 17.
Dallman TJ et al. Clin. Infect. Dis. 2015 Apr 17.
The utility and public health implications of PCR and whole genome sequencing for the detection and investigation of an outbreak of shiga toxin-producing Escherichia coli serogroup O26:H11.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Dallman TJ et al. Epidemiol. Infect. 2014 Oct 15. 1-9
Dallman TJ et al. Epidemiol. Infect. 2014 Oct 15. 1-9
Insights from 20 years of bacterial genome sequencing.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Land M et al. Funct. Integr. Genomics 2015 Mar (2) 141-61
Land M et al. Funct. Integr. Genomics 2015 Mar (2) 141-61
Comparative genomic analysis of a multiple antimicrobial resistant enterotoxigenic E. coli O157 lineage from Australian pigs.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Wyrsch E et al. BMC Genomics 2015 165
Wyrsch E et al. BMC Genomics 2015 165
Analysis of whole genome sequencing for the Escherichia coli O157:H7 typing phages.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Cowley LA et al. BMC Genomics 2015 Apr 8. (1) 271
Cowley LA et al. BMC Genomics 2015 Apr 8. (1) 271
Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-serotypes of shiga toxin-producing Escherichia coli O104.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Yan X et al. BMC Microbiol. 2015 (1) 83
Yan X et al. BMC Microbiol. 2015 (1) 83
GeneSippr: A rapid whole-genome approach for the identification and characterization of foodborne pathogens such as priority shiga toxigenic Escherichia coli.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Lambert D et al. PLoS ONE 2015 (4) e0122928
Lambert D et al. PLoS ONE 2015 (4) e0122928
Complete genome sequence of a carbapenem-resistant extraintestinal pathogenic Escherichia coli strain belonging to the sequence type 131 H30R subclade.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Johnson TJ et al. Genome Announc 2015 (2)
Johnson TJ et al. Genome Announc 2015 (2)
Genome sequences of two bovine mastitis-causing Escherichia coli strains.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Kempf F et al. Genome Announc 2015 (2)
Kempf F et al. Genome Announc 2015 (2)
Draft genome sequence of NDM-5-producing Escherichia coli sequence type 648 and genetic context of blaNDM-5 in Australia.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Wailan AM et al. Genome Announc 2015 (2)
Wailan AM et al. Genome Announc 2015 (2)
Public health investigation of two outbreaks of Shiga toxin-producing Escherichia coli O157 associated with consumption of watercress.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Jenkins C et al. Appl. Environ. Microbiol. 2015 Apr 3.
Jenkins C et al. Appl. Environ. Microbiol. 2015 Apr 3.
Draft genome sequence of enterotoxigenic Escherichia coli strain E24377A, obtained from a tribal drinking water source in India.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Tamhankar AJ et al. Genome Announc 2015 (2)
Tamhankar AJ et al. Genome Announc 2015 (2)
Comparative genomic analysis of two novel sporadic shiga toxin-producing Escherichia coli O104:H4 strains isolated 2011 in Germany.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Tietze E et al. PLoS ONE 2015 (4) e0122074
Tietze E et al. PLoS ONE 2015 (4) e0122074
Clinical epidemiology and molecular analysis of extended-spectrum ß-lactamase-producing Escherichia coli in Nepal: characteristics of sequence types ST131 and ST648.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Sherchan JB et al. Antimicrob. Agents Chemother. 2015 Mar 30.
Sherchan JB et al. Antimicrob. Agents Chemother. 2015 Mar 30.
Comparison of whole genome sequences from human and non-human Escherichia coli O26 strains.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Norman KN et al. Front Cell Infect Microbiol 2015 21
Norman KN et al. Front Cell Infect Microbiol 2015 21
Complete genome sequences of Escherichia coli strains 1303 and ECC-1470 isolated from bovine mastitis.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Leimbach A et al. Genome Announc 2015 (2)
Leimbach A et al. Genome Announc 2015 (2)
Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Sabarly V et al. Environ. Microbiol. 2015 Mar 25.
Sabarly V et al. Environ. Microbiol. 2015 Mar 25.
Insight into shiga toxin genes encoded by Escherichia coli O157 from whole genome sequencing.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Ashton PM et al. PeerJ 2015 e739
Ashton PM et al. PeerJ 2015 e739
Genomic analysis and clinical importance of Escherichia coli isolate from patients with sepsis.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Chakraborty A et al. Indian J Pathol Microbiol 2015 Jan-Mar (1) 22-6
Chakraborty A et al. Indian J Pathol Microbiol 2015 Jan-Mar (1) 22-6
EcoliNet: a database of cofunctional gene network for Escherichia coli.![External Web Site Icon External Web Site Icon](https://lh3.googleusercontent.com/blogger_img_proxy/AEn0k_vOkHr9hY24SDMzkVM2iUOXfIhqzUiqUlvYrAtOFFk0w5uVVJbXYGfx7VBrBflBpn92jbUG7WOCJSMPV2leo-6k7u6JZ0omR8iphwnji-lXPZwAaFf8SAAS=s0-d)
Kim Hanhae et al. Database (Oxford) 2015
Kim Hanhae et al. Database (Oxford) 2015
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